RedwoodCenter - User contributions [en]

VS212B

2013-12-10T05:52:41Z

Masilver: /* Week 6 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/book WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, et al. (2013, 5th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2012, 3rd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 4 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Land & Fernald paper on [http://redwood.berkeley.edu/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapter 3

* '''Nov. 6 - Phototransduction; photoreceptor renewal; dynamic range'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
** Reading:
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

==== Week 2 (Olshausen) ====
* '''Nov. 11 - (Veteran's Day Holiday)'''
* '''Nov. 13 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Rodieck, Chapter3
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 18 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie]

* '''Nov. 20 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images

* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 25 (4 - 6PM) - Extrastriate cortex'''
** Extrastriate cortex
*** [http://redwood.berkeley.edu/VS212B/lecture_1_slides_2013.pdf Lecture slides]
*** Supplemental readings (optional):
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
**** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Kandel et al., Chapter 28, pp. 621-628
**** Wolfe et al., Chapter 4, pp. 85-91; Chapter 8, p. 240
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion]
**** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
**** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI]
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]

==== Week 5 (Silver) ====
* '''Dec. 2 (4 - 6PM) - Visual attention'''
** Visual attention
*** [http://redwood.berkeley.edu/VS212B/lecture_2_slides_2013.pdf Lecture slides]
*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 7, pp. 187-218
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Dec. 4 (4 - 6PM) - Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience
*** [http://redwood.berkeley.edu/VS212B/lecture_3_slides_2013.pdf Lecture slides]
*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
**** [http://redwood.berkeley.edu/VS212B/lopes_da_silva_2013.pdf Lopes da Silva (2013) "EEG and MEG: Relevance to neuroscience" Neuron 80:1111-1128]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/SubML_BrainInflation.mp4 cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]

==== Week 6 (Silver) ====
* '''Dec. 11 (4 - 6PM) - Visual cortical development and plasticity'''

** [http://redwood.berkeley.edu/VS212B/lecture_4_slides_2013.pdf Lecture slides]
** Visual cortical development and plasticity
*** Supplemental readings (optional):
**** Fahle and Poggio, Introduction, pp. ix-xix
**** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72; Chapter 8, pp. 129-140
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1218-1221; Chapter 56, pp. 1259-1274
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
**** [http://redwood.berkeley.edu/VS212B/kirkby_et_al_2013.pdf Kirkby, Sack, Firl, and Feller (2013) "A role for correlated spontaneous activity in the assembly of neural circuits" Neuron 80:1129-1144]
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
*** Video from lecture:
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2013-12-10T05:50:46Z

Masilver: /* Week 5 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/book WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, et al. (2013, 5th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2012, 3rd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 4 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Land & Fernald paper on [http://redwood.berkeley.edu/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapter 3

* '''Nov. 6 - Phototransduction; photoreceptor renewal; dynamic range'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
** Reading:
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

==== Week 2 (Olshausen) ====
* '''Nov. 11 - (Veteran's Day Holiday)'''
* '''Nov. 13 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Rodieck, Chapter3
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 18 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie]

* '''Nov. 20 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images

* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 25 (4 - 6PM) - Extrastriate cortex'''
** Extrastriate cortex
*** [http://redwood.berkeley.edu/VS212B/lecture_1_slides_2013.pdf Lecture slides]
*** Supplemental readings (optional):
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
**** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Kandel et al., Chapter 28, pp. 621-628
**** Wolfe et al., Chapter 4, pp. 85-91; Chapter 8, p. 240
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion]
**** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
**** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI]
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]

==== Week 5 (Silver) ====
* '''Dec. 2 (4 - 6PM) - Visual attention'''
** Visual attention
*** [http://redwood.berkeley.edu/VS212B/lecture_2_slides_2013.pdf Lecture slides]
*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 7, pp. 187-218
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Dec. 4 (4 - 6PM) - Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience
*** [http://redwood.berkeley.edu/VS212B/lecture_3_slides_2013.pdf Lecture slides]
*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
**** [http://redwood.berkeley.edu/VS212B/lopes_da_silva_2013.pdf Lopes da Silva (2013) "EEG and MEG: Relevance to neuroscience" Neuron 80:1111-1128]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/SubML_BrainInflation.mp4 cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]

==== Week 6 (Silver) ====
* '''Dec. 11 (4 - 6PM) - Visual cortical development and plasticity'''

** [http://redwood.berkeley.edu/VS212B/lecture_4_slides_2013.pdf Lecture slides]
** Visual cortical development and plasticity
*** Supplemental readings (optional):
**** Fahle and Poggio, Introduction, pp. ix-xix
**** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72; Chapter 8, pp. 129-140
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1218-1221; Chapter 56, pp. 1259-1274
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
*** Video from lecture:
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2013-12-10T05:50:01Z

Masilver: /* Week 5 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/book WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, et al. (2013, 5th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2012, 3rd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 4 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Land & Fernald paper on [http://redwood.berkeley.edu/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapter 3

* '''Nov. 6 - Phototransduction; photoreceptor renewal; dynamic range'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
** Reading:
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

==== Week 2 (Olshausen) ====
* '''Nov. 11 - (Veteran's Day Holiday)'''
* '''Nov. 13 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Rodieck, Chapter3
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 18 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie]

* '''Nov. 20 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images

* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 25 (4 - 6PM) - Extrastriate cortex'''
** Extrastriate cortex
*** [http://redwood.berkeley.edu/VS212B/lecture_1_slides_2013.pdf Lecture slides]
*** Supplemental readings (optional):
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
**** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Kandel et al., Chapter 28, pp. 621-628
**** Wolfe et al., Chapter 4, pp. 85-91; Chapter 8, p. 240
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion]
**** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
**** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI]
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]

==== Week 5 (Silver) ====
* '''Dec. 2 (4 - 6PM) - Visual attention'''
** Visual attention
*** [http://redwood.berkeley.edu/VS212B/lecture_2_slides_2013.pdf Lecture slides]
*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 7, pp. 187-218
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Dec. 4 (4 - 6PM) - Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience
*** [http://redwood.berkeley.edu/VS212B/lecture_3_slides_2013.pdf Lecture slides]
*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
**** [http://redwood.berkeley.edu/VS212B/lopes_da_silver_2013.pdf Lopes da Silver (2013) "EEG and MEG: Relevance to Neuroscience" Neuron 80:1111-1128]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/SubML_BrainInflation.mp4 cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]

==== Week 6 (Silver) ====
* '''Dec. 11 (4 - 6PM) - Visual cortical development and plasticity'''

** [http://redwood.berkeley.edu/VS212B/lecture_4_slides_2013.pdf Lecture slides]
** Visual cortical development and plasticity
*** Supplemental readings (optional):
**** Fahle and Poggio, Introduction, pp. ix-xix
**** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72; Chapter 8, pp. 129-140
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1218-1221; Chapter 56, pp. 1259-1274
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
*** Video from lecture:
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2013-11-24T07:11:29Z

Masilver: /* Week 6 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/book WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, et al. (2013, 5th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2012, 3rd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 4 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Land & Fernald paper on [http://redwood.berkeley.edu/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapter 3

* '''Nov. 6 - Phototransduction; photoreceptor renewal; dynamic range'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
** Reading:
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

==== Week 2 (Olshausen) ====
* '''Nov. 11 - (Veteran's Day Holiday)'''
* '''Nov. 13 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Rodieck, Chapter3
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 18 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie]

* '''Nov. 20 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images

* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 25 (4 - 6PM) - Extrastriate cortex'''
** Extrastriate cortex
*** [http://redwood.berkeley.edu/VS212B/lecture_1_slides_2013.pdf Lecture slides]
*** Supplemental readings (optional):
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
**** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Kandel et al., Chapter 28, pp. 621-628
**** Wolfe et al., Chapter 4, pp. 85-91; Chapter 8, p. 240
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion]
**** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
**** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI]
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]

==== Week 5 (Silver) ====
* '''Dec. 2 (4 - 6PM) - Visual attention'''
** Visual attention
*** [http://redwood.berkeley.edu/VS212B/lecture_2_slides_2013.pdf Lecture slides]
*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 7, pp. 187-218
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Dec. 4 (4 - 6PM) - Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience
*** [http://redwood.berkeley.edu/VS212B/lecture_3_slides_2013.pdf Lecture slides]
*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/SubML_BrainInflation.mp4 cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]

==== Week 6 (Silver) ====
* '''Dec. 11 (4 - 6PM) - Visual cortical development and plasticity'''

** [http://redwood.berkeley.edu/VS212B/lecture_4_slides_2013.pdf Lecture slides]
** Visual cortical development and plasticity
*** Supplemental readings (optional):
**** Fahle and Poggio, Introduction, pp. ix-xix
**** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72; Chapter 8, pp. 129-140
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1218-1221; Chapter 56, pp. 1259-1274
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
*** Video from lecture:
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2013-11-06T01:36:18Z

Masilver: /* Week 5 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/book WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, et al. (2013, 5th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2012, 3rd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 5 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Land & Fernald paper on [http://redwood.berkeley.edu/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapter 3

* '''Nov. 7 - Phototransduction; photoreceptor renewal; dynamic range'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
** Reading:
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

==== Week 2 (Olshausen) ====
* '''Nov. 14 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Rodieck, Chapter3
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 19 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie]

* '''Nov. 20 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images

* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 25 (4 - 6PM) - Extrastriate cortex'''
** Extrastriate cortex
*** [http://redwood.berkeley.edu/VS212B/lecture_1_slides_2013.pdf Lecture slides]
*** Supplemental readings (optional):
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
**** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Kandel et al., Chapter 28, pp. 621-628
**** Wolfe et al., Chapter 4, pp. 85-91; Chapter 8, p. 240
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion]
**** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
**** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI]
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]

==== Week 5 (Silver) ====
* '''Dec. 2 (4 - 6PM) - Visual attention'''
** Visual attention
*** [http://redwood.berkeley.edu/VS212B/lecture_2_slides_2013.pdf Lecture slides]
*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 7, pp. 187-218
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Dec. 4 (4 - 6PM) - Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience
*** [http://redwood.berkeley.edu/VS212B/lecture_3_slides_2013.pdf Lecture slides]
*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]

* '''Dec. 11 (4 - 6PM) - Visual cortical development and plasticity'''

** [http://redwood.berkeley.edu/VS212B/nov30_2011_lecture_slides.pdf Lecture slides]
** Visual cortical development and plasticity
*** Supplemental readings (optional):
**** Fahle and Poggio, Introduction, pp. ix-xix
**** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72; Chapter 8, pp. 129-140
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1218-1221; Chapter 56, pp. 1259-1274
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
*** Video from lecture:
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2013-11-06T01:35:21Z

Masilver: /* Week 4 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/book WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, et al. (2013, 5th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2012, 3rd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 5 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Land & Fernald paper on [http://redwood.berkeley.edu/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapter 3

* '''Nov. 7 - Phototransduction; photoreceptor renewal; dynamic range'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
** Reading:
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

==== Week 2 (Olshausen) ====
* '''Nov. 14 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Rodieck, Chapter3
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 19 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie]

* '''Nov. 20 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images

* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 25 (4 - 6PM) - Extrastriate cortex'''
** Extrastriate cortex
*** [http://redwood.berkeley.edu/VS212B/lecture_1_slides_2013.pdf Lecture slides]
*** Supplemental readings (optional):
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
**** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Kandel et al., Chapter 28, pp. 621-628
**** Wolfe et al., Chapter 4, pp. 85-91; Chapter 8, p. 240
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion]
**** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
**** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI]
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]

==== Week 5 (Silver) ====
* '''Dec. 2 (4 - 6PM) - Visual attention'''
** Visual attention
*** [http://redwood.berkeley.edu/VS212B/lecture_2_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 7, pp. 187-218
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Dec. 4 (4 - 6PM) - Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience
*** [http://redwood.berkeley.edu/VS212B/lecture_3_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]

* '''Dec. 11 (4 - 6PM) - Visual cortical development and plasticity'''

** [http://redwood.berkeley.edu/VS212B/nov30_2011_lecture_slides.pdf Lecture slides]
** Visual cortical development and plasticity
*** Supplemental readings (optional):
**** Fahle and Poggio, Introduction, pp. ix-xix
**** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72; Chapter 8, pp. 129-140
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1218-1221; Chapter 56, pp. 1259-1274
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
*** Video from lecture:
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2013-11-06T01:34:58Z

Masilver: /* Week 4 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/book WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, et al. (2013, 5th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2012, 3rd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 5 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Land & Fernald paper on [http://redwood.berkeley.edu/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapter 3

* '''Nov. 7 - Phototransduction; photoreceptor renewal; dynamic range'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
** Reading:
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

==== Week 2 (Olshausen) ====
* '''Nov. 14 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Rodieck, Chapter3
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 19 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie]

* '''Nov. 20 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images

* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 25 (4 - 6PM) - Extrastriate cortex'''
** Extrastriate cortex
*** [Xhttp://redwood.berkeley.edu/VS212B/lecture_1_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
**** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Kandel et al., Chapter 28, pp. 621-628
**** Wolfe et al., Chapter 4, pp. 85-91; Chapter 8, p. 240
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion]
**** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
**** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI]
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]

==== Week 5 (Silver) ====
* '''Dec. 2 (4 - 6PM) - Visual attention'''
** Visual attention
*** [http://redwood.berkeley.edu/VS212B/lecture_2_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 7, pp. 187-218
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Dec. 4 (4 - 6PM) - Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience
*** [http://redwood.berkeley.edu/VS212B/lecture_3_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]

* '''Dec. 11 (4 - 6PM) - Visual cortical development and plasticity'''

** [http://redwood.berkeley.edu/VS212B/nov30_2011_lecture_slides.pdf Lecture slides]
** Visual cortical development and plasticity
*** Supplemental readings (optional):
**** Fahle and Poggio, Introduction, pp. ix-xix
**** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72; Chapter 8, pp. 129-140
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1218-1221; Chapter 56, pp. 1259-1274
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
*** Video from lecture:
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2013-11-06T01:32:06Z

Masilver: /* Week 4 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/book WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, et al. (2013, 5th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2012, 3rd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 5 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Land & Fernald paper on [http://redwood.berkeley.edu/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapter 3

* '''Nov. 7 - Phototransduction; photoreceptor renewal; dynamic range'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
** Reading:
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

==== Week 2 (Olshausen) ====
* '''Nov. 14 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Rodieck, Chapter3
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 19 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie]

* '''Nov. 20 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images

* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 25 (4 - 6PM) - Extrastriate cortex'''
** Extrastriate cortex
*** [http://redwood.berkeley.edu/VS212B/lecture_1_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
**** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Kandel et al., Chapter 28, pp. 621-628
**** Wolfe et al., Chapter 4, pp. 85-91; Chapter 8, p. 240
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion]
**** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
**** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI]
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]

==== Week 5 (Silver) ====
* '''Dec. 2 (4 - 6PM) - Visual attention'''
** Visual attention
*** [http://redwood.berkeley.edu/VS212B/lecture_2_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 7, pp. 187-218
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Dec. 4 (4 - 6PM) - Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience
*** [http://redwood.berkeley.edu/VS212B/lecture_3_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]

* '''Dec. 11 (4 - 6PM) - Visual cortical development and plasticity'''

** [http://redwood.berkeley.edu/VS212B/nov30_2011_lecture_slides.pdf Lecture slides]
** Visual cortical development and plasticity
*** Supplemental readings (optional):
**** Fahle and Poggio, Introduction, pp. ix-xix
**** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72; Chapter 8, pp. 129-140
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1218-1221; Chapter 56, pp. 1259-1274
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
*** Video from lecture:
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2013-11-06T01:31:30Z

Masilver: /* Week 5 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/book WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, et al. (2013, 5th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2012, 3rd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 5 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Land & Fernald paper on [http://redwood.berkeley.edu/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapter 3

* '''Nov. 7 - Phototransduction; photoreceptor renewal; dynamic range'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
** Reading:
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

==== Week 2 (Olshausen) ====
* '''Nov. 14 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Rodieck, Chapter3
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 19 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie]

* '''Nov. 20 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images

* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 25 (4 - 6PM) - Extrastriate cortex'''
** Extrastriate cortex
*** [http://redwood.berkeley.edu/VS212B/lecture_1_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
**** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Kandel et al., Chapter 28, pp. 621-628
**** Wolfe et al., Chapter 4, pp. 85-91; Chapter 8, p. 240
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion]
**** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
**** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI]
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]
* '''Dec. 2 (4 - 6PM) - Visual attention'''
** Visual attention
*** [http://redwood.berkeley.edu/VS212B/lecture_2_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 7, pp. 187-218
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Dec. 4 (4 - 6PM) - Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience
*** [http://redwood.berkeley.edu/VS212B/lecture_3_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]

==== Week 5 (Silver) ====
* '''Dec. 2 (4 - 6PM) - Visual attention'''
** Visual attention
*** [http://redwood.berkeley.edu/VS212B/lecture_2_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 7, pp. 187-218
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Dec. 4 (4 - 6PM) - Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience
*** [http://redwood.berkeley.edu/VS212B/lecture_3_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]

* '''Dec. 11 (4 - 6PM) - Visual cortical development and plasticity'''

** [http://redwood.berkeley.edu/VS212B/nov30_2011_lecture_slides.pdf Lecture slides]
** Visual cortical development and plasticity
*** Supplemental readings (optional):
**** Fahle and Poggio, Introduction, pp. ix-xix
**** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72; Chapter 8, pp. 129-140
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1218-1221; Chapter 56, pp. 1259-1274
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
*** Video from lecture:
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2013-11-06T01:30:43Z

Masilver: /* Week 5 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/book WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, et al. (2013, 5th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2012, 3rd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 5 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Land & Fernald paper on [http://redwood.berkeley.edu/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapter 3

* '''Nov. 7 - Phototransduction; photoreceptor renewal; dynamic range'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
** Reading:
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

==== Week 2 (Olshausen) ====
* '''Nov. 14 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Rodieck, Chapter3
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 19 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie]

* '''Nov. 20 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images

* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 25 (4 - 6PM) - Extrastriate cortex'''
** Extrastriate cortex
*** [http://redwood.berkeley.edu/VS212B/lecture_1_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
**** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Kandel et al., Chapter 28, pp. 621-628
**** Wolfe et al., Chapter 4, pp. 85-91; Chapter 8, p. 240
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion]
**** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
**** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI]
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]
* '''Dec. 2 (4 - 6PM) - Visual attention'''
** Visual attention
*** [http://redwood.berkeley.edu/VS212B/lecture_2_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 7, pp. 187-218
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Dec. 4 (4 - 6PM) - Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience
*** [http://redwood.berkeley.edu/VS212B/lecture_3_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]

==== Week 5 (Silver) ====
* '''Dec. 11 (4 - 6PM) - Visual cortical development and plasticity'''

** [http://redwood.berkeley.edu/VS212B/nov30_2011_lecture_slides.pdf Lecture slides]
** Visual cortical development and plasticity
*** Supplemental readings (optional):
**** Fahle and Poggio, Introduction, pp. ix-xix
**** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72; Chapter 8, pp. 129-140
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1218-1221; Chapter 56, pp. 1259-1274
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
*** Video from lecture:
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2013-11-06T01:30:09Z

Masilver: /* Week 4 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/book WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, et al. (2013, 5th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2012, 3rd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 5 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Land & Fernald paper on [http://redwood.berkeley.edu/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapter 3

* '''Nov. 7 - Phototransduction; photoreceptor renewal; dynamic range'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
** Reading:
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

==== Week 2 (Olshausen) ====
* '''Nov. 14 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Rodieck, Chapter3
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 19 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie]

* '''Nov. 20 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images

* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 25 (4 - 6PM) - Extrastriate cortex'''
** Extrastriate cortex
*** [http://redwood.berkeley.edu/VS212B/lecture_1_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
**** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Kandel et al., Chapter 28, pp. 621-628
**** Wolfe et al., Chapter 4, pp. 85-91; Chapter 8, p. 240
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion]
**** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
**** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI]
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]
* '''Dec. 2 (4 - 6PM) - Visual attention'''
** Visual attention
*** [http://redwood.berkeley.edu/VS212B/lecture_2_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 7, pp. 187-218
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Dec. 4 (4 - 6PM) - Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience
*** [http://redwood.berkeley.edu/VS212B/lecture_3_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]

==== Week 5 (Silver) ====
* '''Dec. 3 (4 - 6:30PM) - Experimental methods in visual neuroscience / Visual cortical development and plasticity'''

** [http://redwood.berkeley.edu/VS212B/nov30_2011_lecture_slides.pdf Lecture slides]
** Visual cortical development and plasticity
*** Supplemental readings (optional):
**** Fahle and Poggio, Introduction, pp. ix-xix
**** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72; Chapter 8, pp. 129-140
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1218-1221; Chapter 56, pp. 1259-1274
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
*** Video from lecture:
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2013-11-06T01:28:48Z

Masilver: /* Week 4 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/book WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, et al. (2013, 5th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2012, 3rd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 5 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Land & Fernald paper on [http://redwood.berkeley.edu/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapter 3

* '''Nov. 7 - Phototransduction; photoreceptor renewal; dynamic range'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
** Reading:
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

==== Week 2 (Olshausen) ====
* '''Nov. 14 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Rodieck, Chapter3
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 19 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie]

* '''Nov. 20 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images

* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 25 (4 - 6:30) - Extrastriate cortex'''
** Extrastriate cortex
*** [http://redwood.berkeley.edu/VS212B/lecture_1_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
**** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Kandel et al., Chapter 28, pp. 621-628
**** Wolfe et al., Chapter 4, pp. 85-91; Chapter 8, p. 240
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion]
**** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
**** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI]
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]
* '''Dec. 2 (4 - 6PM) - Visual attention'''
** Visual attention
*** [http://redwood.berkeley.edu/VS212B/lecture_2_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 7, pp. 187-218
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Nov. 28 (4 - 6:30PM) - Visual attention / Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience
*** [http://redwood.berkeley.edu/VS212B/lecture_3_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]

==== Week 5 (Silver) ====
* '''Dec. 3 (4 - 6:30PM) - Experimental methods in visual neuroscience / Visual cortical development and plasticity'''

** [http://redwood.berkeley.edu/VS212B/nov30_2011_lecture_slides.pdf Lecture slides]
** Visual cortical development and plasticity
*** Supplemental readings (optional):
**** Fahle and Poggio, Introduction, pp. ix-xix
**** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72; Chapter 8, pp. 129-140
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1218-1221; Chapter 56, pp. 1259-1274
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
*** Video from lecture:
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2013-11-06T01:26:40Z

Masilver: /* Week 5 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/book WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, et al. (2013, 5th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2012, 3rd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 5 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Land & Fernald paper on [http://redwood.berkeley.edu/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapter 3

* '''Nov. 7 - Phototransduction; photoreceptor renewal; dynamic range'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
** Reading:
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

==== Week 2 (Olshausen) ====
* '''Nov. 14 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Rodieck, Chapter3
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 19 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie]

* '''Nov. 20 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images

* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 26 (4 - 6:30PM) - Extrastriate cortex / Visual attention'''
** Extrastriate cortex
*** [http://redwood.berkeley.edu/VS212B/lecture_1_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
**** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Kandel et al., Chapter 28, pp. 621-628
**** Wolfe et al., Chapter 4, pp. 85-91; Chapter 8, p. 240
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion]
**** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
**** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI]
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]
** Visual attention
*** [http://redwood.berkeley.edu/VS212B/lecture_2_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 7, pp. 187-218
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Nov. 28 (4 - 6:30PM) - Visual attention / Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience
*** [http://redwood.berkeley.edu/VS212B/lecture_3_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]

==== Week 5 (Silver) ====
* '''Dec. 3 (4 - 6:30PM) - Experimental methods in visual neuroscience / Visual cortical development and plasticity'''

** [http://redwood.berkeley.edu/VS212B/nov30_2011_lecture_slides.pdf Lecture slides]
** Visual cortical development and plasticity
*** Supplemental readings (optional):
**** Fahle and Poggio, Introduction, pp. ix-xix
**** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72; Chapter 8, pp. 129-140
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1218-1221; Chapter 56, pp. 1259-1274
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
*** Video from lecture:
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2013-11-06T01:23:51Z

Masilver: /* Week 4 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/book WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, et al. (2013, 5th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2012, 3rd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 5 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Land & Fernald paper on [http://redwood.berkeley.edu/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapter 3

* '''Nov. 7 - Phototransduction; photoreceptor renewal; dynamic range'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
** Reading:
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

==== Week 2 (Olshausen) ====
* '''Nov. 14 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Rodieck, Chapter3
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 19 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie]

* '''Nov. 20 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images

* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 26 (4 - 6:30PM) - Extrastriate cortex / Visual attention'''
** Extrastriate cortex
*** [http://redwood.berkeley.edu/VS212B/lecture_1_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
**** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Kandel et al., Chapter 28, pp. 621-628
**** Wolfe et al., Chapter 4, pp. 85-91; Chapter 8, p. 240
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion]
**** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
**** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI]
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]
** Visual attention
*** [http://redwood.berkeley.edu/VS212B/lecture_2_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 7, pp. 187-218
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Nov. 28 (4 - 6:30PM) - Visual attention / Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience
*** [http://redwood.berkeley.edu/VS212B/lecture_3_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]

==== Week 5 (Silver) ====
* '''Dec. 3 (4 - 6:30PM) - Experimental methods in visual neuroscience / Visual cortical development and plasticity'''

** [http://redwood.berkeley.edu/VS212B/nov30_2011_lecture_slides.pdf Lecture slides]
** Visual cortical development and plasticity
*** Supplemental readings (optional):
**** Fahle and Poggio, Introduction, pp. ix-xix
**** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1063-1066; Chapter 56, pp. 1115-1127
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
*** Video from lecture:
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2013-11-06T01:15:47Z

Masilver: /* Week 4 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/book WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, et al. (2013, 5th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2012, 3rd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 5 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Land & Fernald paper on [http://redwood.berkeley.edu/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapter 3

* '''Nov. 7 - Phototransduction; photoreceptor renewal; dynamic range'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
** Reading:
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

==== Week 2 (Olshausen) ====
* '''Nov. 14 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Rodieck, Chapter3
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 19 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie]

* '''Nov. 20 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images

* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 26 (4 - 6:30PM) - Extrastriate cortex / Visual attention'''
** Extrastriate cortex
*** [http://redwood.berkeley.edu/VS212B/lecture_1_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
**** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Wolfe et al., Chapter 4, pp. 85-91; Chapter 7, pp. 204-206
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion]
**** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
**** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI]
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]
** Visual attention
*** [http://redwood.berkeley.edu/VS212B/lecture_2_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 8, pp. 189-209
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Nov. 28 (4 - 6:30PM) - Visual attention / Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience
*** [http://redwood.berkeley.edu/VS212B/lecture_3_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]

==== Week 5 (Silver) ====
* '''Dec. 3 (4 - 6:30PM) - Experimental methods in visual neuroscience / Visual cortical development and plasticity'''

** [http://redwood.berkeley.edu/VS212B/nov30_2011_lecture_slides.pdf Lecture slides]
** Visual cortical development and plasticity
*** Supplemental readings (optional):
**** Fahle and Poggio, Introduction, pp. ix-xix
**** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1063-1066; Chapter 56, pp. 1115-1127
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
*** Video from lecture:
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2013-11-06T01:11:36Z

Masilver: /* Reading and other resources */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/book WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, et al. (2013, 5th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2012, 3rd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 5 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Land & Fernald paper on [http://redwood.berkeley.edu/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapter 3

* '''Nov. 7 - Phototransduction; photoreceptor renewal; dynamic range'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
** Reading:
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

==== Week 2 (Olshausen) ====
* '''Nov. 14 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Rodieck, Chapter3
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 19 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie]

* '''Nov. 20 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images

* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 26 (4 - 6:30PM) - Extrastriate cortex / Visual attention'''
** Extrastriate cortex
*** [http://redwood.berkeley.edu/VS212B/lecture_1_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
**** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Wolfe et al., Chapter 4, pp. 96-101; Chapter 7, pp. 186-187
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion]
**** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
**** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI]
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]
** Visual attention
*** [http://redwood.berkeley.edu/VS212B/lecture_2_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 8, pp. 189-209
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Nov. 28 (4 - 6:30PM) - Visual attention / Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience
*** [http://redwood.berkeley.edu/VS212B/lecture_3_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]

==== Week 5 (Silver) ====
* '''Dec. 3 (4 - 6:30PM) - Experimental methods in visual neuroscience / Visual cortical development and plasticity'''

** [http://redwood.berkeley.edu/VS212B/nov30_2011_lecture_slides.pdf Lecture slides]
** Visual cortical development and plasticity
*** Supplemental readings (optional):
**** Fahle and Poggio, Introduction, pp. ix-xix
**** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1063-1066; Chapter 56, pp. 1115-1127
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
*** Video from lecture:
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2012-11-24T07:06:19Z

Masilver: /* Week 5 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/book WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, James Schwartz, and Tom Jessell (2000, 4th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2009, 2nd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 5 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Land & Fernald paper on [http://redwood.berkeley.edu/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapter 3

* '''Nov. 7 - Phototransduction; photoreceptor renewal; dynamic range'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
** Reading:
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

==== Week 2 (Olshausen) ====
* '''Nov. 14 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Rodieck, Chapter3
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 19 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie]

* '''Nov. 20 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images

* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 26 (4 - 6:30PM) - Extrastriate cortex / Visual attention'''
** Extrastriate cortex
*** [http://redwood.berkeley.edu/VS212B/lecture_1_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
**** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Wolfe et al., Chapter 4, pp. 96-101; Chapter 7, pp. 186-187
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion]
**** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
**** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI]
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]
** Visual attention
*** [http://redwood.berkeley.edu/VS212B/lecture_2_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 8, pp. 189-209
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Nov. 28 (4 - 6:30PM) - Visual attention / Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience
*** [http://redwood.berkeley.edu/VS212B/lecture_3_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]

==== Week 5 (Silver) ====
* '''Dec. 3 (4 - 6:30PM) - Experimental methods in visual neuroscience / Visual cortical development and plasticity'''

** [http://redwood.berkeley.edu/VS212B/nov30_2011_lecture_slides.pdf Lecture slides]
** Visual cortical development and plasticity
*** Supplemental readings (optional):
**** Fahle and Poggio, Introduction, pp. ix-xix
**** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1063-1066; Chapter 56, pp. 1115-1127
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
*** Video from lecture:
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2012-11-24T06:58:26Z

Masilver: /* Week 4 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/book WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, James Schwartz, and Tom Jessell (2000, 4th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2009, 2nd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 5 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Land & Fernald paper on [http://redwood.berkeley.edu/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapter 3

* '''Nov. 7 - Phototransduction; photoreceptor renewal; dynamic range'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
** Reading:
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

==== Week 2 (Olshausen) ====
* '''Nov. 14 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Rodieck, Chapter3
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 19 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie]

* '''Nov. 20 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images

* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 26 (4 - 6:30PM) - Extrastriate cortex / Visual attention'''
** Extrastriate cortex
*** [http://redwood.berkeley.edu/VS212B/lecture_1_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
**** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Wolfe et al., Chapter 4, pp. 96-101; Chapter 7, pp. 186-187
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion]
**** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
**** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI]
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]
** Visual attention
*** [http://redwood.berkeley.edu/VS212B/lecture_2_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 8, pp. 189-209
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Nov. 28 (4 - 6:30PM) - Visual attention / Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience
*** [http://redwood.berkeley.edu/VS212B/lecture_3_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]

==== Week 5 (Silver) ====
* '''Dec. 3 (4 - 6:30PM) - Experimental methods in visual neuroscience / Visual cortical development and plasticity'''

** Visual cortical development and plasticity
*** Supplemental readings (optional):
**** Fahle and Poggio, Introduction, pp. ix-xix
**** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1063-1066; Chapter 56, pp. 1115-1127
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
*** Video from lecture:
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2012-11-24T06:55:53Z

Masilver: /* Week 4 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/book WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, James Schwartz, and Tom Jessell (2000, 4th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2009, 2nd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 5 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Land & Fernald paper on [http://redwood.berkeley.edu/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapter 3

* '''Nov. 7 - Phototransduction; photoreceptor renewal; dynamic range'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
** Reading:
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

==== Week 2 (Olshausen) ====
* '''Nov. 14 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Rodieck, Chapter3
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 19 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie]

* '''Nov. 20 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images

* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 26 (4 - 6:30PM) - Extrastriate cortex / Visual attention'''
** Extrastriate cortex
*** [http://redwood.berkeley.edu/VS212B/lecture_1_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
**** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Wolfe et al., Chapter 4, pp. 96-101; Chapter 7, pp. 186-187
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion]
**** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
**** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI]
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]
** Visual attention
*** [http://redwood.berkeley.edu/VS212B/lecture_2_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 8, pp. 189-209
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Nov. 28 (4 - 6:30PM) - Visual attention / Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience

*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]

==== Week 5 (Silver) ====
* '''Dec. 3 (4 - 6:30PM) - Experimental methods in visual neuroscience / Visual cortical development and plasticity'''

** Visual cortical development and plasticity
*** Supplemental readings (optional):
**** Fahle and Poggio, Introduction, pp. ix-xix
**** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1063-1066; Chapter 56, pp. 1115-1127
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
*** Video from lecture:
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2012-11-24T06:49:41Z

Masilver: /* Week 4 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/book WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, James Schwartz, and Tom Jessell (2000, 4th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2009, 2nd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 5 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Land & Fernald paper on [http://redwood.berkeley.edu/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapter 3

* '''Nov. 7 - Phototransduction; photoreceptor renewal; dynamic range'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
** Reading:
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

==== Week 2 (Olshausen) ====
* '''Nov. 14 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Rodieck, Chapter3
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 19 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie]

* '''Nov. 20 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images

* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 26 (4 - 6:30PM) - Extrastriate cortex / Visual attention'''
** Extrastriate cortex
*** [http://redwood.berkeley.edu/VS212B/lecture_1_slides_2012.pdf Lecture slides]
*** Supplemental readings (optional):
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
**** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Wolfe et al., Chapter 4, pp. 96-101; Chapter 7, pp. 186-187
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion]
**** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
**** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI]
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]
** Visual attention

*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 8, pp. 189-209
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Nov. 28 (4 - 6:30PM) - Visual attention / Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience

*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]

==== Week 5 (Silver) ====
* '''Dec. 3 (4 - 6:30PM) - Experimental methods in visual neuroscience / Visual cortical development and plasticity'''

** Visual cortical development and plasticity
*** Supplemental readings (optional):
**** Fahle and Poggio, Introduction, pp. ix-xix
**** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1063-1066; Chapter 56, pp. 1115-1127
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
*** Video from lecture:
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2012-11-24T06:49:12Z

Masilver: /* Week 4 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/book WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, James Schwartz, and Tom Jessell (2000, 4th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2009, 2nd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 5 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Land & Fernald paper on [http://redwood.berkeley.edu/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapter 3

* '''Nov. 7 - Phototransduction; photoreceptor renewal; dynamic range'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
** Reading:
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

==== Week 2 (Olshausen) ====
* '''Nov. 14 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Rodieck, Chapter3
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 19 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie]

* '''Nov. 20 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images

* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 26 (4 - 6:30PM) - Extrastriate cortex / Visual attention'''
** Extrastriate cortex
*** [http://redwood.berkeley.edu/VS212B/lecture_1_slides.pdf Lecture slides]
*** Supplemental readings (optional):
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
**** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Wolfe et al., Chapter 4, pp. 96-101; Chapter 7, pp. 186-187
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion]
**** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
**** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI]
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]
** Visual attention

*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 8, pp. 189-209
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Nov. 28 (4 - 6:30PM) - Visual attention / Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience

*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]

==== Week 5 (Silver) ====
* '''Dec. 3 (4 - 6:30PM) - Experimental methods in visual neuroscience / Visual cortical development and plasticity'''

** Visual cortical development and plasticity
*** Supplemental readings (optional):
**** Fahle and Poggio, Introduction, pp. ix-xix
**** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1063-1066; Chapter 56, pp. 1115-1127
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
*** Video from lecture:
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2012-11-24T05:34:57Z

Masilver: /* Week 5 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/book WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, James Schwartz, and Tom Jessell (2000, 4th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2009, 2nd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 5 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Land & Fernald paper on [http://redwood.berkeley.edu/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapter 3

* '''Nov. 7 - Phototransduction; photoreceptor renewal; dynamic range'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
** Reading:
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

==== Week 2 (Olshausen) ====
* '''Nov. 14 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Rodieck, Chapter3
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 19 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie]

* '''Nov. 20 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images

* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 26 (4 - 6:30PM) - Extrastriate cortex / Visual attention'''
** Extrastriate cortex

*** Supplemental readings (optional):
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
**** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Wolfe et al., Chapter 4, pp. 96-101; Chapter 7, pp. 186-187
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion]
**** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
**** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI]
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]
** Visual attention

*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 8, pp. 189-209
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Nov. 28 (4 - 6:30PM) - Visual attention / Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience

*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]

==== Week 5 (Silver) ====
* '''Dec. 3 (4 - 6:30PM) - Experimental methods in visual neuroscience / Visual cortical development and plasticity'''

** Visual cortical development and plasticity
*** Supplemental readings (optional):
**** Fahle and Poggio, Introduction, pp. ix-xix
**** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1063-1066; Chapter 56, pp. 1115-1127
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
*** Video from lecture:
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2012-11-24T05:33:51Z

Masilver: /* Week 5 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/book WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, James Schwartz, and Tom Jessell (2000, 4th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2009, 2nd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 5 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Land & Fernald paper on [http://redwood.berkeley.edu/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapter 3

* '''Nov. 7 - Phototransduction; photoreceptor renewal; dynamic range'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
** Reading:
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

==== Week 2 (Olshausen) ====
* '''Nov. 14 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Rodieck, Chapter3
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 19 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie]

* '''Nov. 20 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images

* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 26 (4 - 6:30PM) - Extrastriate cortex / Visual attention'''
** Extrastriate cortex

*** Supplemental readings (optional):
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
**** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Wolfe et al., Chapter 4, pp. 96-101; Chapter 7, pp. 186-187
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion]
**** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
**** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI]
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]
** Visual attention

*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 8, pp. 189-209
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Nov. 28 (4 - 6:30PM) - Visual attention / Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience

*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]

==== Week 5 (Silver) ====
* '''Dec. 3 (4 - 6:30PM) - Experimental methods in visual neuroscience / Visual cortical development and plasticity'''


** Visual cortical development and plasticity
***Supplemental readings (optional):
**** Fahle and Poggio, Introduction, pp. ix-xix
**** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1063-1066; Chapter 56, pp. 1115-1127
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
*** Video from lecture:
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2012-11-24T05:32:43Z

Masilver: /* Week 5 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/book WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, James Schwartz, and Tom Jessell (2000, 4th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2009, 2nd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 5 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Land & Fernald paper on [http://redwood.berkeley.edu/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapter 3

* '''Nov. 7 - Phototransduction; photoreceptor renewal; dynamic range'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
** Reading:
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

==== Week 2 (Olshausen) ====
* '''Nov. 14 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Rodieck, Chapter3
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 19 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie]

* '''Nov. 20 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images

* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 26 (4 - 6:30PM) - Extrastriate cortex / Visual attention'''
** Extrastriate cortex

*** Supplemental readings (optional):
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
**** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Wolfe et al., Chapter 4, pp. 96-101; Chapter 7, pp. 186-187
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion]
**** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
**** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI]
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]
** Visual attention

*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 8, pp. 189-209
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Nov. 28 (4 - 6:30PM) - Visual attention / Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience

*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]

==== Week 5 (Silver) ====
* '''Dec. 3 (4 - 6:30PM) - Experimental methods in visual neuroscience / Visual cortical development and plasticity'''

**Supplemental readings (optional):
*** Fahle and Poggio, Introduction, pp. ix-xix
*** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72
*** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1063-1066; Chapter 56, pp. 1115-1127
*** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
*** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
** Video from lecture:
*** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2012-11-21T23:45:30Z

Masilver: /* Week 4 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/book WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, James Schwartz, and Tom Jessell (2000, 4th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2009, 2nd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 5 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Land & Fernald paper on [http://redwood.berkeley.edu/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapter 3

* '''Nov. 7 - Phototransduction; photoreceptor renewal; dynamic range'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
** Reading:
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

==== Week 2 (Olshausen) ====
* '''Nov. 14 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Rodieck, Chapter3
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 19 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie]

* '''Nov. 20 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images

* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 26 (4 - 6:30PM) - Extrastriate cortex / Visual attention'''
** Extrastriate cortex

*** Supplemental readings (optional):
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
**** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Wolfe et al., Chapter 4, pp. 96-101; Chapter 7, pp. 186-187
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion]
**** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
**** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI]
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]
** Visual attention

*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 8, pp. 189-209
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Nov. 28 (4 - 6:30PM) - Visual attention / Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience

*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]

==== Week 5 (Silver) ====
* '''Dec. 3 (4 - 6:30PM) - Experimental methods in visual neuroscience / Visual cortical development and plasticity'''

VS212B

2012-11-21T23:44:07Z

Masilver: /* Week 4 (Silver) */

VS212B

2012-11-21T23:42:38Z

Masilver: /* Week 4 (Silver) */

VS212B

2012-11-21T23:39:32Z

Masilver: /* Week 4 (Silver) */

VS212B

2012-11-21T23:38:04Z

Masilver: /* Week 4 (Silver) */

VS212B

2012-11-17T02:24:12Z

Masilver: /* Syllabus */

VS212B

2012-11-17T02:22:37Z

Masilver: /* Week 4 (Silver) */

VS212B

2012-11-17T02:21:28Z

Masilver: /* Syllabus */

VS212B

2012-11-17T02:19:47Z

Masilver: /* Syllabus */

VS212B

2011-11-14T19:44:19Z

Masilver: /* Week 4 (Silver) */

VS212B

2011-11-14T18:58:15Z

Masilver: /* Week 4 (Silver) */

VS212B

2011-11-14T18:56:15Z

Masilver: /* Week 5 (Silver) */

VS212B

2011-11-14T18:51:11Z

Masilver: /* Week 4 (Silver) */

VS212B

2011-11-04T18:41:48Z

Masilver: /* Week 4 (Silver) */

VS212B

2011-11-04T03:04:23Z

Masilver: /* Week 5 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/ WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, James Schwartz, and Tom Jessell (2000, 4th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2009, 2nd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Oct. 31 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Land & Fernald paper on [http://redwood.berkeley.edu/bruno/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapters 3 & 8, plus "Interlude on plotting light intensity" (pp. 151-154)
* '''Nov. 2 - Phototransduction; lateral inhibition'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture2.pdf Lecture slides]

==== Week 2 (Olshausen) ====
* '''Nov. 7 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/bruno/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/bruno/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/bruno/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/bruno/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

* '''Nov. 9 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/bruno/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/bruno/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/bruno/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/bruno/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/bruno/VS212B/induced-fading-movie.mov movie]

==== Week 3 (Olshausen/Silver) ====
* '''Nov. 14 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/bruno/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/bruno/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images
** Demos:
*** [http://www.johnsadowski.com/big_spanish_castle.php Spanish castle color after-effect]

* [http://redwood.berkeley.edu/bruno/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

* '''Nov. 16 (4-6PM) - Extrastriate cortex: physiology, anatomy, and neuropsychology'''
** [http://redwood.berkeley.edu/bruno/VS212B/nov16_2011_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
*** Fahle and Greenlee, Chapter 7, pp. 210-218
*** Wolfe et al., Chapter 4, pp. 96-101; Chapter 7, pp. 186-187
*** [http://redwood.berkeley.edu/bruno/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
*** [http://redwood.berkeley.edu/bruno/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/anderson_and_winawer_2005.mov Luminance illusion]
*** [http://redwood.berkeley.edu/bruno/VS212B/FALLS.MOV Waterfall motion illusion]
*** [http://redwood.berkeley.edu/bruno/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
*** [http://redwood.berkeley.edu/bruno/VS212B/V1MTmovie.mov Locating area MT with fMRI]
*** [http://redwood.berkeley.edu/bruno/VS212B/prosopagnosia.mov Prosopagnosia]
*** [http://redwood.berkeley.edu/bruno/VS212B/misbinding.mov Misbinding of color and motion]

==== Week 4 (Silver) ====
* '''Nov. 21 (4-6PM) - Visual attention'''
** [http://redwood.berkeley.edu/bruno/VS212B/nov21_2011_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** Fahle and Greenlee, Chapter 7, pp. 218-236
*** Gazzaniga, Chapter 43, pp. 589-606
*** Wolfe et al., Chapter 8, pp. 189-209
*** [http://redwood.berkeley.edu/bruno/VS212B/pessoa_et_al_2003.pdf Pessoa, Kastner, and Ungerleider (2003) "Neuroimaging studies of attention: From modulation of sensory processing to top-down control" Journal of Neuroscience 23:3990-3998]
*** [http://redwood.berkeley.edu/bruno/VS212B/reynolds_and_chelazzi_2004.pdf Reynolds and Chelazzi (2004) "Attentional modulation of visual processing" Annual Review of Neuroscience 27:611-647]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/Gorilla.mov gorilla change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/quirkology1a.mov The Colour Changing Card Trick]
*** [http://redwood.berkeley.edu/bruno/VS212B/Airplane.mov airplane change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/Tourists.mov sphinx change blindness demo]

==== Week 5 (Silver) ====
* '''Nov. 28 (4-6PM) - Experimental methods in visual neuroscience'''
** [http://redwood.berkeley.edu/bruno/VS212B/nov28_2011_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** [http://redwood.berkeley.edu/bruno/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
*** [http://redwood.berkeley.edu/bruno/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
*** [http://redwood.berkeley.edu/bruno/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
*** [http://redwood.berkeley.edu/bruno/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
*** [http://redwood.berkeley.edu/bruno/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
*** [http://redwood.berkeley.edu/bruno/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
*** [http://redwood.berkeley.edu/bruno/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
*** [http://redwood.berkeley.edu/bruno/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/arash_fazl.gif cortical magnification]
* '''Nov. 30 (4-6PM) - Visual cortical development and plasticity'''
** [http://redwood.berkeley.edu/bruno/VS212B/nov30_2011_lecture_slides.pdf Lecture slides]
**Supplemental readings (optional):
*** Fahle and Poggio, Introduction, pp. ix-xix
*** Kandel, Schwartz, and Jessell, Chapter 53, pp. 1049-1051; Chapter 54, pp. 1063-1066; Chapter 56, pp. 1115-1127
*** [http://redwood.berkeley.edu/bruno/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
*** [http://redwood.berkeley.edu/bruno/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
** Video from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2011-11-04T03:03:46Z

Masilver: /* Week 4 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/ WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, James Schwartz, and Tom Jessell (2000, 4th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2009, 2nd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Oct. 31 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Land & Fernald paper on [http://redwood.berkeley.edu/bruno/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapters 3 & 8, plus "Interlude on plotting light intensity" (pp. 151-154)
* '''Nov. 2 - Phototransduction; lateral inhibition'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture2.pdf Lecture slides]

==== Week 2 (Olshausen) ====
* '''Nov. 7 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/bruno/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/bruno/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/bruno/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/bruno/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

* '''Nov. 9 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/bruno/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/bruno/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/bruno/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/bruno/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/bruno/VS212B/induced-fading-movie.mov movie]

==== Week 3 (Olshausen/Silver) ====
* '''Nov. 14 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/bruno/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/bruno/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images
** Demos:
*** [http://www.johnsadowski.com/big_spanish_castle.php Spanish castle color after-effect]

* [http://redwood.berkeley.edu/bruno/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

* '''Nov. 16 (4-6PM) - Extrastriate cortex: physiology, anatomy, and neuropsychology'''
** [http://redwood.berkeley.edu/bruno/VS212B/nov16_2011_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
*** Fahle and Greenlee, Chapter 7, pp. 210-218
*** Wolfe et al., Chapter 4, pp. 96-101; Chapter 7, pp. 186-187
*** [http://redwood.berkeley.edu/bruno/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
*** [http://redwood.berkeley.edu/bruno/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/anderson_and_winawer_2005.mov Luminance illusion]
*** [http://redwood.berkeley.edu/bruno/VS212B/FALLS.MOV Waterfall motion illusion]
*** [http://redwood.berkeley.edu/bruno/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
*** [http://redwood.berkeley.edu/bruno/VS212B/V1MTmovie.mov Locating area MT with fMRI]
*** [http://redwood.berkeley.edu/bruno/VS212B/prosopagnosia.mov Prosopagnosia]
*** [http://redwood.berkeley.edu/bruno/VS212B/misbinding.mov Misbinding of color and motion]

==== Week 4 (Silver) ====
* '''Nov. 21 (4-6PM) - Visual attention'''
** [http://redwood.berkeley.edu/bruno/VS212B/nov21_2011_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** Fahle and Greenlee, Chapter 7, pp. 218-236
*** Gazzaniga, Chapter 43, pp. 589-606
*** Wolfe et al., Chapter 8, pp. 189-209
*** [http://redwood.berkeley.edu/bruno/VS212B/pessoa_et_al_2003.pdf Pessoa, Kastner, and Ungerleider (2003) "Neuroimaging studies of attention: From modulation of sensory processing to top-down control" Journal of Neuroscience 23:3990-3998]
*** [http://redwood.berkeley.edu/bruno/VS212B/reynolds_and_chelazzi_2004.pdf Reynolds and Chelazzi (2004) "Attentional modulation of visual processing" Annual Review of Neuroscience 27:611-647]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/Gorilla.mov gorilla change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/quirkology1a.mov The Colour Changing Card Trick]
*** [http://redwood.berkeley.edu/bruno/VS212B/Airplane.mov airplane change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/Tourists.mov sphinx change blindness demo]

==== Week 5 (Silver) ====
* '''Nov. 28 (4-6PM) - Experimental methods in visual neuroscience'''
** [http://redwood.berkeley.edu/bruno/VS212B/dec6_2010_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** [http://redwood.berkeley.edu/bruno/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
*** [http://redwood.berkeley.edu/bruno/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
*** [http://redwood.berkeley.edu/bruno/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
*** [http://redwood.berkeley.edu/bruno/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
*** [http://redwood.berkeley.edu/bruno/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
*** [http://redwood.berkeley.edu/bruno/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
*** [http://redwood.berkeley.edu/bruno/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
*** [http://redwood.berkeley.edu/bruno/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/arash_fazl.gif cortical magnification]
* '''Nov. 30 (4-6PM) - Visual cortical development and plasticity'''
** [http://redwood.berkeley.edu/bruno/VS212B/dec8_2010_lecture_slides.pdf Lecture slides]
**Supplemental readings (optional):
*** Fahle and Poggio, Introduction, pp. ix-xix
*** Kandel, Schwartz, and Jessell, Chapter 53, pp. 1049-1051; Chapter 54, pp. 1063-1066; Chapter 56, pp. 1115-1127
*** [http://redwood.berkeley.edu/bruno/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
*** [http://redwood.berkeley.edu/bruno/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
** Video from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2011-11-04T03:03:18Z

Masilver: /* Week 3 (Olshausen/Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/ WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, James Schwartz, and Tom Jessell (2000, 4th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2009, 2nd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Oct. 31 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Land & Fernald paper on [http://redwood.berkeley.edu/bruno/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapters 3 & 8, plus "Interlude on plotting light intensity" (pp. 151-154)
* '''Nov. 2 - Phototransduction; lateral inhibition'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture2.pdf Lecture slides]

==== Week 2 (Olshausen) ====
* '''Nov. 7 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/bruno/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/bruno/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/bruno/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/bruno/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

* '''Nov. 9 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/bruno/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/bruno/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/bruno/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/bruno/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/bruno/VS212B/induced-fading-movie.mov movie]

==== Week 3 (Olshausen/Silver) ====
* '''Nov. 14 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/bruno/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/bruno/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images
** Demos:
*** [http://www.johnsadowski.com/big_spanish_castle.php Spanish castle color after-effect]

* [http://redwood.berkeley.edu/bruno/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

* '''Nov. 16 (4-6PM) - Extrastriate cortex: physiology, anatomy, and neuropsychology'''
** [http://redwood.berkeley.edu/bruno/VS212B/nov16_2011_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
*** Fahle and Greenlee, Chapter 7, pp. 210-218
*** Wolfe et al., Chapter 4, pp. 96-101; Chapter 7, pp. 186-187
*** [http://redwood.berkeley.edu/bruno/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
*** [http://redwood.berkeley.edu/bruno/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/anderson_and_winawer_2005.mov Luminance illusion]
*** [http://redwood.berkeley.edu/bruno/VS212B/FALLS.MOV Waterfall motion illusion]
*** [http://redwood.berkeley.edu/bruno/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
*** [http://redwood.berkeley.edu/bruno/VS212B/V1MTmovie.mov Locating area MT with fMRI]
*** [http://redwood.berkeley.edu/bruno/VS212B/prosopagnosia.mov Prosopagnosia]
*** [http://redwood.berkeley.edu/bruno/VS212B/misbinding.mov Misbinding of color and motion]

==== Week 4 (Silver) ====
* '''Nov. 21 (4-6PM) - Visual attention'''
** [http://redwood.berkeley.edu/bruno/VS212B/dec1_2010_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** Fahle and Greenlee, Chapter 7, pp. 218-236
*** Gazzaniga, Chapter 43, pp. 589-606
*** Wolfe et al., Chapter 8, pp. 189-209
*** [http://redwood.berkeley.edu/bruno/VS212B/pessoa_et_al_2003.pdf Pessoa, Kastner, and Ungerleider (2003) "Neuroimaging studies of attention: From modulation of sensory processing to top-down control" Journal of Neuroscience 23:3990-3998]
*** [http://redwood.berkeley.edu/bruno/VS212B/reynolds_and_chelazzi_2004.pdf Reynolds and Chelazzi (2004) "Attentional modulation of visual processing" Annual Review of Neuroscience 27:611-647]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/Gorilla.mov gorilla change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/quirkology1a.mov The Colour Changing Card Trick]
*** [http://redwood.berkeley.edu/bruno/VS212B/Airplane.mov airplane change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/Tourists.mov sphinx change blindness demo]

==== Week 5 (Silver) ====
* '''Nov. 28 (4-6PM) - Experimental methods in visual neuroscience'''
** [http://redwood.berkeley.edu/bruno/VS212B/dec6_2010_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** [http://redwood.berkeley.edu/bruno/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
*** [http://redwood.berkeley.edu/bruno/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
*** [http://redwood.berkeley.edu/bruno/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
*** [http://redwood.berkeley.edu/bruno/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
*** [http://redwood.berkeley.edu/bruno/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
*** [http://redwood.berkeley.edu/bruno/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
*** [http://redwood.berkeley.edu/bruno/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
*** [http://redwood.berkeley.edu/bruno/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/arash_fazl.gif cortical magnification]
* '''Nov. 30 (4-6PM) - Visual cortical development and plasticity'''
** [http://redwood.berkeley.edu/bruno/VS212B/dec8_2010_lecture_slides.pdf Lecture slides]
**Supplemental readings (optional):
*** Fahle and Poggio, Introduction, pp. ix-xix
*** Kandel, Schwartz, and Jessell, Chapter 53, pp. 1049-1051; Chapter 54, pp. 1063-1066; Chapter 56, pp. 1115-1127
*** [http://redwood.berkeley.edu/bruno/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
*** [http://redwood.berkeley.edu/bruno/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
** Video from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2011-11-04T02:41:37Z

Masilver: /* Reading and other resources */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/ WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, James Schwartz, and Tom Jessell (2000, 4th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2009, 2nd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Oct. 31 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Land & Fernald paper on [http://redwood.berkeley.edu/bruno/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapters 3 & 8, plus "Interlude on plotting light intensity" (pp. 151-154)
* '''Nov. 2 - Phototransduction; lateral inhibition'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture2.pdf Lecture slides]

==== Week 2 (Olshausen) ====
* '''Nov. 7 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/bruno/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/bruno/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/bruno/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/bruno/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

* '''Nov. 9 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/bruno/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/bruno/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/bruno/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/bruno/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/bruno/VS212B/induced-fading-movie.mov movie]

==== Week 3 (Olshausen/Silver) ====
* '''Nov. 14 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/bruno/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/bruno/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images
** Demos:
*** [http://www.johnsadowski.com/big_spanish_castle.php Spanish castle color after-effect]

* [http://redwood.berkeley.edu/bruno/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

* '''Nov. 16 (4-6PM) - Extrastriate cortex: physiology, anatomy, and neuropsychology'''
** [http://redwood.berkeley.edu/bruno/VS212B/nov29_2010_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
*** Fahle and Greenlee, Chapter 7, pp. 210-218
*** Wolfe et al., Chapter 4, pp. 96-101; Chapter 7, pp. 186-187
*** [http://redwood.berkeley.edu/bruno/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
*** [http://redwood.berkeley.edu/bruno/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/anderson_and_winawer_2005.mov Luminance illusion]
*** [http://redwood.berkeley.edu/bruno/VS212B/FALLS.MOV Waterfall motion illusion]
*** [http://redwood.berkeley.edu/bruno/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
*** [http://redwood.berkeley.edu/bruno/VS212B/V1MTmovie.mov Locating area MT with fMRI]
*** [http://redwood.berkeley.edu/bruno/VS212B/prosopagnosia.mov Prosopagnosia]
*** [http://redwood.berkeley.edu/bruno/VS212B/misbinding.mov Misbinding of color and motion]

==== Week 4 (Silver) ====
* '''Nov. 21 (4-6PM) - Visual attention'''
** [http://redwood.berkeley.edu/bruno/VS212B/dec1_2010_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** Fahle and Greenlee, Chapter 7, pp. 218-236
*** Gazzaniga, Chapter 43, pp. 589-606
*** Wolfe et al., Chapter 8, pp. 189-209
*** [http://redwood.berkeley.edu/bruno/VS212B/pessoa_et_al_2003.pdf Pessoa, Kastner, and Ungerleider (2003) "Neuroimaging studies of attention: From modulation of sensory processing to top-down control" Journal of Neuroscience 23:3990-3998]
*** [http://redwood.berkeley.edu/bruno/VS212B/reynolds_and_chelazzi_2004.pdf Reynolds and Chelazzi (2004) "Attentional modulation of visual processing" Annual Review of Neuroscience 27:611-647]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/Gorilla.mov gorilla change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/quirkology1a.mov The Colour Changing Card Trick]
*** [http://redwood.berkeley.edu/bruno/VS212B/Airplane.mov airplane change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/Tourists.mov sphinx change blindness demo]

==== Week 5 (Silver) ====
* '''Nov. 28 (4-6PM) - Experimental methods in visual neuroscience'''
** [http://redwood.berkeley.edu/bruno/VS212B/dec6_2010_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** [http://redwood.berkeley.edu/bruno/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
*** [http://redwood.berkeley.edu/bruno/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
*** [http://redwood.berkeley.edu/bruno/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
*** [http://redwood.berkeley.edu/bruno/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
*** [http://redwood.berkeley.edu/bruno/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
*** [http://redwood.berkeley.edu/bruno/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
*** [http://redwood.berkeley.edu/bruno/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
*** [http://redwood.berkeley.edu/bruno/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/arash_fazl.gif cortical magnification]
* '''Nov. 30 (4-6PM) - Visual cortical development and plasticity'''
** [http://redwood.berkeley.edu/bruno/VS212B/dec8_2010_lecture_slides.pdf Lecture slides]
**Supplemental readings (optional):
*** Fahle and Poggio, Introduction, pp. ix-xix
*** Kandel, Schwartz, and Jessell, Chapter 53, pp. 1049-1051; Chapter 54, pp. 1063-1066; Chapter 56, pp. 1115-1127
*** [http://redwood.berkeley.edu/bruno/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
*** [http://redwood.berkeley.edu/bruno/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
** Video from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2011-11-04T00:11:51Z

Masilver: /* Week 5 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/ WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2004, 3rd edition) The Cognitive Neurosciences
** Eric Kandel, James Schwartz, and Tom Jessell (2000, 4th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2009, 2nd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Oct. 31 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Land & Fernald paper on [http://redwood.berkeley.edu/bruno/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapters 3 & 8, plus "Interlude on plotting light intensity" (pp. 151-154)
* '''Nov. 2 - Phototransduction; lateral inhibition'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture2.pdf Lecture slides]

==== Week 2 (Olshausen) ====
* '''Nov. 7 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/bruno/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/bruno/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/bruno/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/bruno/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

* '''Nov. 9 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/bruno/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/bruno/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/bruno/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/bruno/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/bruno/VS212B/induced-fading-movie.mov movie]

==== Week 3 (Olshausen/Silver) ====
* '''Nov. 14 - Redundancy reduction; LGN; visual cortex'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
*** [http://redwood.berkeley.edu/bruno/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/bruno/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images
** Demos:
*** [http://www.johnsadowski.com/big_spanish_castle.php Spanish castle color after-effect]

* [http://redwood.berkeley.edu/bruno/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

* '''Nov. 16 (4-6PM) - Extrastriate cortex: physiology, anatomy, and neuropsychology'''
** [http://redwood.berkeley.edu/bruno/VS212B/nov29_2010_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
*** Fahle and Greenlee, Chapter 7, pp. 210-218
*** Wolfe et al., Chapter 4, pp. 96-101; Chapter 7, pp. 186-187
*** [http://redwood.berkeley.edu/bruno/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
*** [http://redwood.berkeley.edu/bruno/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/anderson_and_winawer_2005.mov Luminance illusion]
*** [http://redwood.berkeley.edu/bruno/VS212B/FALLS.MOV Waterfall motion illusion]
*** [http://redwood.berkeley.edu/bruno/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
*** [http://redwood.berkeley.edu/bruno/VS212B/V1MTmovie.mov Locating area MT with fMRI]
*** [http://redwood.berkeley.edu/bruno/VS212B/prosopagnosia.mov Prosopagnosia]
*** [http://redwood.berkeley.edu/bruno/VS212B/misbinding.mov Misbinding of color and motion]

==== Week 4 (Silver) ====
* '''Nov. 21 (4-6PM) - Visual attention'''
** [http://redwood.berkeley.edu/bruno/VS212B/dec1_2010_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** Fahle and Greenlee, Chapter 7, pp. 218-236
*** Gazzaniga, Chapter 43, pp. 589-606
*** Wolfe et al., Chapter 8, pp. 189-209
*** [http://redwood.berkeley.edu/bruno/VS212B/pessoa_et_al_2003.pdf Pessoa, Kastner, and Ungerleider (2003) "Neuroimaging studies of attention: From modulation of sensory processing to top-down control" Journal of Neuroscience 23:3990-3998]
*** [http://redwood.berkeley.edu/bruno/VS212B/reynolds_and_chelazzi_2004.pdf Reynolds and Chelazzi (2004) "Attentional modulation of visual processing" Annual Review of Neuroscience 27:611-647]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/Gorilla.mov gorilla change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/quirkology1a.mov The Colour Changing Card Trick]
*** [http://redwood.berkeley.edu/bruno/VS212B/Airplane.mov airplane change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/Tourists.mov sphinx change blindness demo]

==== Week 5 (Silver) ====
* '''Nov. 28 (4-6PM) - Experimental methods in visual neuroscience'''
** [http://redwood.berkeley.edu/bruno/VS212B/dec6_2010_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** [http://redwood.berkeley.edu/bruno/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
*** [http://redwood.berkeley.edu/bruno/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
*** [http://redwood.berkeley.edu/bruno/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
*** [http://redwood.berkeley.edu/bruno/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
*** [http://redwood.berkeley.edu/bruno/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
*** [http://redwood.berkeley.edu/bruno/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
*** [http://redwood.berkeley.edu/bruno/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
*** [http://redwood.berkeley.edu/bruno/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/arash_fazl.gif cortical magnification]
* '''Nov. 30 (4-6PM) - Visual cortical development and plasticity'''
** [http://redwood.berkeley.edu/bruno/VS212B/dec8_2010_lecture_slides.pdf Lecture slides]
**Supplemental readings (optional):
*** Fahle and Poggio, Introduction, pp. ix-xix
*** Kandel, Schwartz, and Jessell, Chapter 53, pp. 1049-1051; Chapter 54, pp. 1063-1066; Chapter 56, pp. 1115-1127
*** [http://redwood.berkeley.edu/bruno/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
*** [http://redwood.berkeley.edu/bruno/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
** Video from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/marla_retinal_waves.MOV Retinal waves]

VS212B

2010-11-24T17:54:34Z

Masilver: /* Week 5 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/ WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2004, 3rd edition) The Cognitive Neurosciences
** Eric Kandel, James Schwartz, and Tom Jessell (2000, 4th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2009, 2nd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 8 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Land & Fernald paper on [http://redwood.berkeley.edu/bruno/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapters 3 & 8, plus "Interlude on plotting light intensity" (pp. 151-154)
* '''Nov. 10 - Photoreceptors; lateral inhibition'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture2.pdf Lecture slides]

==== Week 2 (Olshausen) ====
* '''Nov. 15 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/bruno/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/bruno/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/bruno/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/bruno/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

* '''Nov. 17 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/bruno/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/bruno/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/bruno/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/bruno/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/bruno/VS212B/induced-fading-movie.mov movie]

==== Week 3 (Olshausen) ====
* '''Nov. 22 - Redundancy reduction; LGN; visual cortex'''

** Reading:
*** [http://redwood.berkeley.edu/bruno/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/bruno/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images
** Demos:
*** [http://www.johnsadowski.com/big_spanish_castle.php Spanish castle color after-effect]

* [http://redwood.berkeley.edu/bruno/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 29 (4-6PM) - Extrastriate cortex: physiology, anatomy, and neuropsychology'''
** [http://redwood.berkeley.edu/bruno/VS212B/nov29_2010_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
*** Fahle and Greenlee, Chapter 7, pp. 210-218
*** Wolfe et al., Chapter 4, pp. 96-101; Chapter 7, pp. 186-187
*** [http://redwood.berkeley.edu/bruno/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
*** [http://redwood.berkeley.edu/bruno/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/anderson_and_winawer_2005.mov Luminance illusion]
*** [http://redwood.berkeley.edu/bruno/VS212B/FALLS.MOV Waterfall motion illusion]
*** [http://redwood.berkeley.edu/bruno/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
*** [http://redwood.berkeley.edu/bruno/VS212B/V1MTmovie.mov Locating area MT with fMRI]
*** [http://redwood.berkeley.edu/bruno/VS212B/prosopagnosia.mov Prosopagnosia]
*** [http://redwood.berkeley.edu/bruno/VS212B/misbinding.mov Misbinding of color and motion]
* '''Dec. 1 (4-6PM) - Visual attention'''
** [http://redwood.berkeley.edu/bruno/VS212B/dec1_2010_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** Fahle and Greenlee, Chapter 7, pp. 218-236
*** Gazzaniga, Chapter 43, pp. 589-606
*** Wolfe et al., Chapter 8, pp. 189-209
*** [http://redwood.berkeley.edu/bruno/VS212B/pessoa_et_al_2003.pdf Pessoa, Kastner, and Ungerleider (2003) "Neuroimaging studies of attention: From modulation of sensory processing to top-down control" Journal of Neuroscience 23:3990-3998]
*** [http://redwood.berkeley.edu/bruno/VS212B/reynolds_and_chelazzi_2004.pdf Reynolds and Chelazzi (2004) "Attentional modulation of visual processing" Annual Review of Neuroscience 27:611-647]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/Gorilla.mov gorilla change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/quirkology1a.mov The Colour Changing Card Trick]
*** [http://redwood.berkeley.edu/bruno/VS212B/Airplane.mov airplane change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/Tourists.mov sphinx change blindness demo]

==== Week 5 (Silver) ====
* '''Dec. 6 (4-6PM, 394 Minor Hall) - Experimental methods in visual neuroscience'''
** [http://redwood.berkeley.edu/bruno/VS212B/dec6_2010_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** [http://redwood.berkeley.edu/bruno/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
*** [http://redwood.berkeley.edu/bruno/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
*** [http://redwood.berkeley.edu/bruno/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
*** [http://redwood.berkeley.edu/bruno/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
*** [http://redwood.berkeley.edu/bruno/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
*** [http://redwood.berkeley.edu/bruno/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
*** [http://redwood.berkeley.edu/bruno/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
*** [http://redwood.berkeley.edu/bruno/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/arash_fazl.gif cortical magnification]
* '''Dec. 8 (4-6PM) - Visual cortical development and plasticity'''
** [http://redwood.berkeley.edu/bruno/VS212B/dec8_2010_lecture_slides.pdf Lecture slides]
**Supplemental readings (optional):
*** Fahle and Poggio, Introduction, pp. ix-xix
*** Kandel, Schwartz, and Jessell, Chapter 53, pp. 1049-1051; Chapter 54, pp. 1063-1066; Chapter 56, pp. 1115-1127
*** [http://redwood.berkeley.edu/bruno/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
*** [http://redwood.berkeley.edu/bruno/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
** Video from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/marla_retinal_waves.MOV Retinal waves]

==== Week 6 (Silver) ====

VS212B

2010-11-24T17:53:02Z

Masilver: /* Week 4 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/ WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2004, 3rd edition) The Cognitive Neurosciences
** Eric Kandel, James Schwartz, and Tom Jessell (2000, 4th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2009, 2nd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 8 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Land & Fernald paper on [http://redwood.berkeley.edu/bruno/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapters 3 & 8, plus "Interlude on plotting light intensity" (pp. 151-154)
* '''Nov. 10 - Photoreceptors; lateral inhibition'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture2.pdf Lecture slides]

==== Week 2 (Olshausen) ====
* '''Nov. 15 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/bruno/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/bruno/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/bruno/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/bruno/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

* '''Nov. 17 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/bruno/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/bruno/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/bruno/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/bruno/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/bruno/VS212B/induced-fading-movie.mov movie]

==== Week 3 (Olshausen) ====
* '''Nov. 22 - Redundancy reduction; LGN; visual cortex'''

** Reading:
*** [http://redwood.berkeley.edu/bruno/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/bruno/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images
** Demos:
*** [http://www.johnsadowski.com/big_spanish_castle.php Spanish castle color after-effect]

* [http://redwood.berkeley.edu/bruno/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 29 (4-6PM) - Extrastriate cortex: physiology, anatomy, and neuropsychology'''
** [http://redwood.berkeley.edu/bruno/VS212B/nov29_2010_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
*** Fahle and Greenlee, Chapter 7, pp. 210-218
*** Wolfe et al., Chapter 4, pp. 96-101; Chapter 7, pp. 186-187
*** [http://redwood.berkeley.edu/bruno/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
*** [http://redwood.berkeley.edu/bruno/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/anderson_and_winawer_2005.mov Luminance illusion]
*** [http://redwood.berkeley.edu/bruno/VS212B/FALLS.MOV Waterfall motion illusion]
*** [http://redwood.berkeley.edu/bruno/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
*** [http://redwood.berkeley.edu/bruno/VS212B/V1MTmovie.mov Locating area MT with fMRI]
*** [http://redwood.berkeley.edu/bruno/VS212B/prosopagnosia.mov Prosopagnosia]
*** [http://redwood.berkeley.edu/bruno/VS212B/misbinding.mov Misbinding of color and motion]
* '''Dec. 1 (4-6PM) - Visual attention'''
** [http://redwood.berkeley.edu/bruno/VS212B/dec1_2010_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** Fahle and Greenlee, Chapter 7, pp. 218-236
*** Gazzaniga, Chapter 43, pp. 589-606
*** Wolfe et al., Chapter 8, pp. 189-209
*** [http://redwood.berkeley.edu/bruno/VS212B/pessoa_et_al_2003.pdf Pessoa, Kastner, and Ungerleider (2003) "Neuroimaging studies of attention: From modulation of sensory processing to top-down control" Journal of Neuroscience 23:3990-3998]
*** [http://redwood.berkeley.edu/bruno/VS212B/reynolds_and_chelazzi_2004.pdf Reynolds and Chelazzi (2004) "Attentional modulation of visual processing" Annual Review of Neuroscience 27:611-647]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/Gorilla.mov gorilla change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/quirkology1a.mov The Colour Changing Card Trick]
*** [http://redwood.berkeley.edu/bruno/VS212B/Airplane.mov airplane change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/Tourists.mov sphinx change blindness demo]

==== Week 5 (Silver) ====
* '''Dec. 6 (4-6PM, 394 Minor Hall) - Experimental methods in visual neuroscience'''
** [http://redwood.berkeley.edu/bruno/VS212B/dec2_2009_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** [http://redwood.berkeley.edu/bruno/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
*** [http://redwood.berkeley.edu/bruno/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
*** [http://redwood.berkeley.edu/bruno/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
*** [http://redwood.berkeley.edu/bruno/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
*** [http://redwood.berkeley.edu/bruno/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
*** [http://redwood.berkeley.edu/bruno/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
*** [http://redwood.berkeley.edu/bruno/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
*** [http://redwood.berkeley.edu/bruno/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/arash_fazl.gif cortical magnification]
* '''Dec. 8 (4-6PM) - Visual cortical development and plasticity'''
** [http://redwood.berkeley.edu/bruno/VS212B/dec7_2009_lecture_slides.pdf Lecture slides]
**Supplemental readings (optional):
*** Fahle and Poggio, Introduction, pp. ix-xix
*** Kandel, Schwartz, and Jessell, Chapter 53, pp. 1049-1051; Chapter 54, pp. 1063-1066; Chapter 56, pp. 1115-1127
*** [http://redwood.berkeley.edu/bruno/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
*** [http://redwood.berkeley.edu/bruno/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
** Video from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/marla_retinal_waves.MOV Retinal waves]

==== Week 6 (Silver) ====

VS212B

2010-11-24T02:42:31Z

Masilver: /* Week 4 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/ WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2004, 3rd edition) The Cognitive Neurosciences
** Eric Kandel, James Schwartz, and Tom Jessell (2000, 4th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2009, 2nd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 8 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Land & Fernald paper on [http://redwood.berkeley.edu/bruno/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapters 3 & 8, plus "Interlude on plotting light intensity" (pp. 151-154)
* '''Nov. 10 - Photoreceptors; lateral inhibition'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture2.pdf Lecture slides]

==== Week 2 (Olshausen) ====
* '''Nov. 15 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture3.pdf Lecture slides]
** Reading:
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/bruno/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/bruno/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/bruno/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/bruno/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

* '''Nov. 17 - Sampling; receptive fields; optic nerve'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/bruno/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/bruno/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/bruno/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/bruno/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/bruno/VS212B/induced-fading-movie.mov movie]

==== Week 3 (Olshausen) ====
* '''Nov. 22 - Redundancy reduction; LGN; visual cortex'''

** Reading:
*** [http://redwood.berkeley.edu/bruno/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/bruno/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images
** Demos:
*** [http://www.johnsadowski.com/big_spanish_castle.php Spanish castle color after-effect]

* [http://redwood.berkeley.edu/bruno/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 29 (4-6PM) - Extrastriate cortex: physiology, anatomy, and neuropsychology'''
** [http://redwood.berkeley.edu/bruno/VS212B/nov29_2010_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
*** Fahle and Greenlee, Chapter 7, pp. 210-218
*** Wolfe et al., Chapter 4, pp. 96-101; Chapter 7, pp. 186-187
*** [http://redwood.berkeley.edu/bruno/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
*** [http://redwood.berkeley.edu/bruno/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/anderson_and_winawer_2005.mov Luminance illusion]
*** [http://redwood.berkeley.edu/bruno/VS212B/FALLS.MOV Waterfall motion illusion]
*** [http://redwood.berkeley.edu/bruno/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
*** [http://redwood.berkeley.edu/bruno/VS212B/V1MTmovie.mov Locating area MT with fMRI]
*** [http://redwood.berkeley.edu/bruno/VS212B/prosopagnosia.mov Prosopagnosia]
*** [http://redwood.berkeley.edu/bruno/VS212B/misbinding.mov Misbinding of color and motion]
* '''Dec. 1 (4-6PM) - Visual attention'''
** [http://redwood.berkeley.edu/bruno/VS212B/dec1_2010_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** Fahle and Greenlee, Chapter 7, pp. 218-236
*** Gazzaniga, Chapter 43, pp. 589-606
*** Wolfe et al., Chapter 8, pp. 189-209
*** [http://redwood.berkeley.edu/bruno/VS212B/pessoa_et_al_2003.pdf Pessoa, Kastner, and Ungerleider (2003) "Neuroimaging studies of attention: From modulation of sensory processing to top-down control" Journal of Neuroscience 23:3990-3998]
*** [http://redwood.berkeley.edu/bruno/VS212B/reynolds_and_chelazzi_2004.pdf Reynolds and Chelazzi (2004) "Attentional modulation of visual processing" Annual Review of Neuroscience 27:611-647]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/Gorilla.mov gorilla change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/quirkology1a.mov The Colour Changing Card Trick]
*** [http://redwood.berkeley.edu/bruno/VS212B/Airplane.mov airplane change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/Tourists.mov sphinx change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/fade.avi Grenoble street scene (you may have trouble viewing this on a Mac)]

==== Week 5 (Silver) ====
* '''Dec. 6 (4-6PM, 394 Minor Hall) - Experimental methods in visual neuroscience'''
** [http://redwood.berkeley.edu/bruno/VS212B/dec2_2009_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** [http://redwood.berkeley.edu/bruno/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
*** [http://redwood.berkeley.edu/bruno/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
*** [http://redwood.berkeley.edu/bruno/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
*** [http://redwood.berkeley.edu/bruno/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
*** [http://redwood.berkeley.edu/bruno/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
*** [http://redwood.berkeley.edu/bruno/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
*** [http://redwood.berkeley.edu/bruno/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
*** [http://redwood.berkeley.edu/bruno/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/arash_fazl.gif cortical magnification]
* '''Dec. 8 (4-6PM) - Visual cortical development and plasticity'''
** [http://redwood.berkeley.edu/bruno/VS212B/dec7_2009_lecture_slides.pdf Lecture slides]
**Supplemental readings (optional):
*** Fahle and Poggio, Introduction, pp. ix-xix
*** Kandel, Schwartz, and Jessell, Chapter 53, pp. 1049-1051; Chapter 54, pp. 1063-1066; Chapter 56, pp. 1115-1127
*** [http://redwood.berkeley.edu/bruno/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
*** [http://redwood.berkeley.edu/bruno/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
** Video from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/marla_retinal_waves.MOV Retinal waves]

==== Week 6 (Silver) ====

VS212B

2010-11-09T05:44:19Z

Masilver: /* Week 5 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/ WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2004, 3rd edition) The Cognitive Neurosciences
** Eric Kandel, James Schwartz, and Tom Jessell (2000, 4th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2009, 2nd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 2 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Land & Fernald paper on [http://redwood.berkeley.edu/bruno/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapters 3 & 8, plus "Interlude on plotting light intensity" (pp. 151-154)
* '''Nov. 4 - Photoreceptors; lateral inhibition'''


==== Week 2 (Olshausen) ====
* '''Nov. 9 - Retinal information processing; scale-invariant sampling lattice'''

** Reading:
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/bruno/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/bruno/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/bruno/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/bruno/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 16 - Sampling; receptive fields; optic nerve'''

** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/bruno/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/bruno/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/bruno/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/bruno/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/bruno/VS212B/induced-fading-movie.mov movie]

* '''Nov. 18 - Redundancy reduction; LGN; visual cortex'''

** Reading:
*** [http://redwood.berkeley.edu/bruno/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/bruno/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images
** Demos:
*** [http://www.johnsadowski.com/big_spanish_castle.php Spanish castle color after-effect]

* [http://redwood.berkeley.edu/bruno/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 29 (4-6PM) - Extrastriate cortex: physiology, anatomy, and neuropsychology'''
** [http://redwood.berkeley.edu/bruno/VS212B/nov23_2009_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
*** Fahle and Greenlee, Chapter 7, pp. 210-218
*** Wolfe et al., Chapter 4, pp. 96-101; Chapter 7, pp. 186-187
*** [http://redwood.berkeley.edu/bruno/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
*** [http://redwood.berkeley.edu/bruno/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/anderson_and_winawer_2005.mov Luminance illusion]
*** [http://redwood.berkeley.edu/bruno/VS212B/FALLS.MOV Waterfall motion illusion]
*** [http://redwood.berkeley.edu/bruno/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
*** [http://redwood.berkeley.edu/bruno/VS212B/V1MTmovie.mov Locating area MT with fMRI]
*** [http://redwood.berkeley.edu/bruno/VS212B/prosopagnosia.mov Prosopagnosia]
*** [http://redwood.berkeley.edu/bruno/VS212B/misbinding.mov Misbinding of color and motion]
* '''Dec. 1 (4-6PM) - Visual attention'''
** [http://redwood.berkeley.edu/bruno/VS212B/nov30_2009_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** Fahle and Greenlee, Chapter 7, pp. 218-236
*** Gazzaniga, Chapter 43, pp. 589-606
*** Wolfe et al., Chapter 8, pp. 189-209
*** [http://redwood.berkeley.edu/bruno/VS212B/pessoa_et_al_2003.pdf Pessoa, Kastner, and Ungerleider (2003) "Neuroimaging studies of attention: From modulation of sensory processing to top-down control" Journal of Neuroscience 23:3990-3998]
*** [http://redwood.berkeley.edu/bruno/VS212B/reynolds_and_chelazzi_2004.pdf Reynolds and Chelazzi (2004) "Attentional modulation of visual processing" Annual Review of Neuroscience 27:611-647]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/Gorilla.mov gorilla change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/quirkology1a.mov The Colour Changing Card Trick]
*** [http://redwood.berkeley.edu/bruno/VS212B/Airplane.mov airplane change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/Tourists.mov sphinx change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/fade.avi Grenoble street scene (you may have trouble viewing this on a Mac)]

==== Week 5 (Silver) ====
* '''Dec. 6 (4-6PM, 394 Minor Hall) - Experimental methods in visual neuroscience'''
** [http://redwood.berkeley.edu/bruno/VS212B/dec2_2009_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** [http://redwood.berkeley.edu/bruno/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
*** [http://redwood.berkeley.edu/bruno/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
*** [http://redwood.berkeley.edu/bruno/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
*** [http://redwood.berkeley.edu/bruno/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
*** [http://redwood.berkeley.edu/bruno/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
*** [http://redwood.berkeley.edu/bruno/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
*** [http://redwood.berkeley.edu/bruno/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
*** [http://redwood.berkeley.edu/bruno/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/arash_fazl.gif cortical magnification]
* '''Dec. 8 (4-6PM) - Visual cortical development and plasticity'''
** [http://redwood.berkeley.edu/bruno/VS212B/dec7_2009_lecture_slides.pdf Lecture slides]
**Supplemental readings (optional):
*** Fahle and Poggio, Introduction, pp. ix-xix
*** Kandel, Schwartz, and Jessell, Chapter 53, pp. 1049-1051; Chapter 54, pp. 1063-1066; Chapter 56, pp. 1115-1127
*** [http://redwood.berkeley.edu/bruno/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
*** [http://redwood.berkeley.edu/bruno/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
** Video from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/marla_retinal_waves.MOV Retinal waves]

==== Week 6 (Silver) ====

VS212B

2010-11-09T05:43:34Z

Masilver: /* Week 5 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/ WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2004, 3rd edition) The Cognitive Neurosciences
** Eric Kandel, James Schwartz, and Tom Jessell (2000, 4th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2009, 2nd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 2 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Land & Fernald paper on [http://redwood.berkeley.edu/bruno/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapters 3 & 8, plus "Interlude on plotting light intensity" (pp. 151-154)
* '''Nov. 4 - Photoreceptors; lateral inhibition'''


==== Week 2 (Olshausen) ====
* '''Nov. 9 - Retinal information processing; scale-invariant sampling lattice'''

** Reading:
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/bruno/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/bruno/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/bruno/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/bruno/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 16 - Sampling; receptive fields; optic nerve'''

** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/bruno/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/bruno/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/bruno/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/bruno/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/bruno/VS212B/induced-fading-movie.mov movie]

* '''Nov. 18 - Redundancy reduction; LGN; visual cortex'''

** Reading:
*** [http://redwood.berkeley.edu/bruno/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/bruno/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images
** Demos:
*** [http://www.johnsadowski.com/big_spanish_castle.php Spanish castle color after-effect]

* [http://redwood.berkeley.edu/bruno/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 29 (4-6PM) - Extrastriate cortex: physiology, anatomy, and neuropsychology'''
** [http://redwood.berkeley.edu/bruno/VS212B/nov23_2009_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
*** Fahle and Greenlee, Chapter 7, pp. 210-218
*** Wolfe et al., Chapter 4, pp. 96-101; Chapter 7, pp. 186-187
*** [http://redwood.berkeley.edu/bruno/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
*** [http://redwood.berkeley.edu/bruno/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/anderson_and_winawer_2005.mov Luminance illusion]
*** [http://redwood.berkeley.edu/bruno/VS212B/FALLS.MOV Waterfall motion illusion]
*** [http://redwood.berkeley.edu/bruno/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
*** [http://redwood.berkeley.edu/bruno/VS212B/V1MTmovie.mov Locating area MT with fMRI]
*** [http://redwood.berkeley.edu/bruno/VS212B/prosopagnosia.mov Prosopagnosia]
*** [http://redwood.berkeley.edu/bruno/VS212B/misbinding.mov Misbinding of color and motion]
* '''Dec. 1 (4-6PM) - Visual attention'''
** [http://redwood.berkeley.edu/bruno/VS212B/nov30_2009_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** Fahle and Greenlee, Chapter 7, pp. 218-236
*** Gazzaniga, Chapter 43, pp. 589-606
*** Wolfe et al., Chapter 8, pp. 189-209
*** [http://redwood.berkeley.edu/bruno/VS212B/pessoa_et_al_2003.pdf Pessoa, Kastner, and Ungerleider (2003) "Neuroimaging studies of attention: From modulation of sensory processing to top-down control" Journal of Neuroscience 23:3990-3998]
*** [http://redwood.berkeley.edu/bruno/VS212B/reynolds_and_chelazzi_2004.pdf Reynolds and Chelazzi (2004) "Attentional modulation of visual processing" Annual Review of Neuroscience 27:611-647]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/Gorilla.mov gorilla change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/quirkology1a.mov The Colour Changing Card Trick]
*** [http://redwood.berkeley.edu/bruno/VS212B/Airplane.mov airplane change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/Tourists.mov sphinx change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/fade.avi Grenoble street scene (you may have trouble viewing this on a Mac)]

==== Week 5 (Silver) ====
* '''Dec. 6 (4-6PM) - Experimental methods in visual neuroscience'''
** [http://redwood.berkeley.edu/bruno/VS212B/dec2_2009_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** [http://redwood.berkeley.edu/bruno/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
*** [http://redwood.berkeley.edu/bruno/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
*** [http://redwood.berkeley.edu/bruno/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
*** [http://redwood.berkeley.edu/bruno/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
*** [http://redwood.berkeley.edu/bruno/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
*** [http://redwood.berkeley.edu/bruno/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
*** [http://redwood.berkeley.edu/bruno/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
*** [http://redwood.berkeley.edu/bruno/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/arash_fazl.gif cortical magnification]
* '''Dec. 7 - Visual cortical development and plasticity'''
** [http://redwood.berkeley.edu/bruno/VS212B/dec7_2009_lecture_slides.pdf Lecture slides]
**Supplemental readings (optional):
*** Fahle and Poggio, Introduction, pp. ix-xix
*** Kandel, Schwartz, and Jessell, Chapter 53, pp. 1049-1051; Chapter 54, pp. 1063-1066; Chapter 56, pp. 1115-1127
*** [http://redwood.berkeley.edu/bruno/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
*** [http://redwood.berkeley.edu/bruno/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
** Video from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/marla_retinal_waves.MOV Retinal waves]

==== Week 6 (Silver) ====

VS212B

2010-11-09T05:43:21Z

Masilver: /* Week 6 (Silver) */

VS212B

2010-11-09T05:43:08Z

Masilver: /* Week 5 (Silver) */

=== Reading and other resources ===
* [http://www.amazon.com/First-Steps-Seeing-Robert-Rodieck/dp/0878937579 Rodieck, "First steps in seeing"]
* [http://www.amazon.com/Foundations-Vision-Brian-Wandell/dp/0878938532/ref=sr_1_1?ie=UTF8&s=books&qid=1258702769&sr=8-1 Wandell, "Foundations of Vision"]
* [http://webvision.med.utah.edu/ WEBVISION] (online resource)
* Books on reserve in Optometry library:
** Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
** Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2004, 3rd edition) The Cognitive Neurosciences
** Eric Kandel, James Schwartz, and Tom Jessell (2000, 4th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2009, 2nd edition) Sensation and Perception

=== Syllabus ===

==== Week 1 (Olshausen) ====
* '''Nov. 2 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:
*** Land & Fernald paper on [http://redwood.berkeley.edu/bruno/VS212B/land-fernald.pdf Evolution of Eyes],
*** Rodieck: Chapters 3 & 8, plus "Interlude on plotting light intensity" (pp. 151-154)
* '''Nov. 4 - Photoreceptors; lateral inhibition'''


==== Week 2 (Olshausen) ====
* '''Nov. 9 - Retinal information processing; scale-invariant sampling lattice'''

** Reading:
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/bruno/VS212B/vanessen-anderson95.pdf Information Processing Strategies and Pathways in the Primate Visual System]
*** Handout on [http://redwood.berkeley.edu/bruno/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** [http://redwood.berkeley.edu/bruno/VS212B/useful-numbers/ Useful numbers in vision science]
* [http://redwood.berkeley.edu/bruno/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice

==== Week 3 (Olshausen) ====
* '''Nov. 16 - Sampling; receptive fields; optic nerve'''

** Reading:
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/bruno/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on [http://redwood.berkeley.edu/bruno/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:
*** [http://redwood.berkeley.edu/bruno/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/bruno/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/bruno/VS212B/induced-fading-movie.mov movie]

* '''Nov. 18 - Redundancy reduction; LGN; visual cortex'''

** Reading:
*** [http://redwood.berkeley.edu/bruno/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/bruno/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images
** Demos:
*** [http://www.johnsadowski.com/big_spanish_castle.php Spanish castle color after-effect]

* [http://redwood.berkeley.edu/bruno/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding

==== Week 4 (Silver) ====
* '''Nov. 29 (4-6PM) - Extrastriate cortex: physiology, anatomy, and neuropsychology'''
** [http://redwood.berkeley.edu/bruno/VS212B/nov23_2009_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
*** Fahle and Greenlee, Chapter 7, pp. 210-218
*** Wolfe et al., Chapter 4, pp. 96-101; Chapter 7, pp. 186-187
*** [http://redwood.berkeley.edu/bruno/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
*** [http://redwood.berkeley.edu/bruno/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/anderson_and_winawer_2005.mov Luminance illusion]
*** [http://redwood.berkeley.edu/bruno/VS212B/FALLS.MOV Waterfall motion illusion]
*** [http://redwood.berkeley.edu/bruno/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
*** [http://redwood.berkeley.edu/bruno/VS212B/V1MTmovie.mov Locating area MT with fMRI]
*** [http://redwood.berkeley.edu/bruno/VS212B/prosopagnosia.mov Prosopagnosia]
*** [http://redwood.berkeley.edu/bruno/VS212B/misbinding.mov Misbinding of color and motion]
* '''Dec. 1 (4-6PM) - Visual attention'''
** [http://redwood.berkeley.edu/bruno/VS212B/nov30_2009_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** Fahle and Greenlee, Chapter 7, pp. 218-236
*** Gazzaniga, Chapter 43, pp. 589-606
*** Wolfe et al., Chapter 8, pp. 189-209
*** [http://redwood.berkeley.edu/bruno/VS212B/pessoa_et_al_2003.pdf Pessoa, Kastner, and Ungerleider (2003) "Neuroimaging studies of attention: From modulation of sensory processing to top-down control" Journal of Neuroscience 23:3990-3998]
*** [http://redwood.berkeley.edu/bruno/VS212B/reynolds_and_chelazzi_2004.pdf Reynolds and Chelazzi (2004) "Attentional modulation of visual processing" Annual Review of Neuroscience 27:611-647]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/Gorilla.mov gorilla change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/quirkology1a.mov The Colour Changing Card Trick]
*** [http://redwood.berkeley.edu/bruno/VS212B/Airplane.mov airplane change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/Tourists.mov sphinx change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/fade.avi Grenoble street scene (you may have trouble viewing this on a Mac)]

==== Week 5 (Silver) ====
* '''Dec. 6 (4-6PM) - Experimental methods in visual neuroscience'''
** [http://redwood.berkeley.edu/bruno/VS212B/dec2_2009_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** [http://redwood.berkeley.edu/bruno/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
*** [http://redwood.berkeley.edu/bruno/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
*** [http://redwood.berkeley.edu/bruno/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
*** [http://redwood.berkeley.edu/bruno/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
*** [http://redwood.berkeley.edu/bruno/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
*** [http://redwood.berkeley.edu/bruno/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
*** [http://redwood.berkeley.edu/bruno/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
*** [http://redwood.berkeley.edu/bruno/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/arash_fazl.gif cortical magnification]

==== Week 6 (Silver) ====
* '''Dec. 7 - Visual cortical development and plasticity'''
** [http://redwood.berkeley.edu/bruno/VS212B/dec7_2009_lecture_slides.pdf Lecture slides]
**Supplemental readings (optional):
*** Fahle and Poggio, Introduction, pp. ix-xix
*** Kandel, Schwartz, and Jessell, Chapter 53, pp. 1049-1051; Chapter 54, pp. 1063-1066; Chapter 56, pp. 1115-1127
*** [http://redwood.berkeley.edu/bruno/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
*** [http://redwood.berkeley.edu/bruno/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
** Video from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/marla_retinal_waves.MOV Retinal waves]