VS265: Reading - Revision history

Bruno: /* 4 Dec */

2014-12-11T02:17:55Z

4 Dec

← Older revision		Revision as of 02:09, 11 December 2014
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	* [http://redwood.berkeley.edu/vs265/info-theory.pdf Information theory primer]		* [http://redwood.berkeley.edu/vs265/info-theory.pdf Information theory primer]
	* [http://redwood.berkeley.edu/vs265/handout-sparse-08.pdf Sparse coding and ICA handout]		* [http://redwood.berkeley.edu/vs265/handout-sparse-08.pdf Sparse coding and ICA handout]
	* Jascha Sohl-Dickstein, [http://~~redwood~~.~~berkeley.edu~~/~~vs265~~/~~jascha-natgrad~~.~~pdf~~ Natural ~~gradients made quick~~ and ~~dirty~~]		* Jascha Sohl-Dickstein, [http://arxiv.org/abs/1205.1828 The Natural Gradient by Analogy to Signal Whitening, and Recipes and Tricks for its Use]
	* Jascha Sohl-Dickstein, [http://redwood.berkeley.edu/vs265/jascha-cookbook.pdf Natural gradient cookbook]		* Jascha Sohl-Dickstein, [http://redwood.berkeley.edu/vs265/jascha-cookbook.pdf Natural gradient cookbook]
	* Bell & Sejnowski, [http://redwood.berkeley.edu/vs265/tony-ica.pdf An Information-Maximization Approach to Blind Separation and Blind Deconvolution], Neural Comp, 1995.		* Bell & Sejnowski, [http://redwood.berkeley.edu/vs265/tony-ica.pdf An Information-Maximization Approach to Blind Separation and Blind Deconvolution], Neural Comp, 1995.

Bruno: /* 9 Dec */

2014-12-10T17:21:32Z

9 Dec

← Older revision		Revision as of 17:13, 10 December 2014
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	Spiking neurons:		Spiking neurons:
	* DA ~~chapter~~ 1-4, 5.4		* DA chapters 1-4, 5.4
	* Karklin & Simoncelli, [http://redwood.berkeley.edu/vs265/karklin-simoncelli.pdf Efficient coding of natural images with a population of noisy Linear-Nonlinear neurons], NIPS 2011.		* Karklin & Simoncelli, [http://redwood.berkeley.edu/vs265/karklin-simoncelli.pdf Efficient coding of natural images with a population of noisy Linear-Nonlinear neurons], NIPS 2011.
	* Chris Eliasmith, Charlie Anderson, [http://books.google.com/books?id=J6jz9s4kbfIC Neural Engineering: Computation, Representation, and Dynamics in Neurobiological Systems], MIT Press, 2004. (Chapter 4 will be emailed to the class.)		* Chris Eliasmith, Charlie Anderson, [http://books.google.com/books?id=J6jz9s4kbfIC Neural Engineering: Computation, Representation, and Dynamics in Neurobiological Systems], MIT Press, 2004. (Chapter 4 will be emailed to the class.)

Bruno: /* 9 Dec */

2014-12-10T07:07:10Z

9 Dec

← Older revision		Revision as of 06:59, 10 December 2014
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	Spiking neurons:		Spiking neurons:
	* DA chapter 1-4, 5.4		* DA chapter 1-4, 5.4
	* Karklin & Simoncelli, [[http://redwood.berkeley.edu/vs265/karklin-simoncelli.pdf Efficient coding of natural images with a population of noisy Linear-Nonlinear neurons], NIPS 2011.		* Karklin & Simoncelli, [http://redwood.berkeley.edu/vs265/karklin-simoncelli.pdf Efficient coding of natural images with a population of noisy Linear-Nonlinear neurons], NIPS 2011.
	* Chris Eliasmith, Charlie Anderson, [http://books.google.com/books?id=J6jz9s4kbfIC Neural Engineering: Computation, Representation, and Dynamics in Neurobiological Systems], MIT Press, 2004. (Chapter 4 will be emailed to the class.)		* Chris Eliasmith, Charlie Anderson, [http://books.google.com/books?id=J6jz9s4kbfIC Neural Engineering: Computation, Representation, and Dynamics in Neurobiological Systems], MIT Press, 2004. (Chapter 4 will be emailed to the class.)
	* Softky and Koch, [http://redwood.berkeley.edu/vs265/softky-koch-jn93.pdf The Highly Irregular Firing of Cortical Cells Is Inconsistent with Temporal Integration of Random EPSPs], J Neuroscience, January 1993, 13(1):334-350.		* Softky and Koch, [http://redwood.berkeley.edu/vs265/softky-koch-jn93.pdf The Highly Irregular Firing of Cortical Cells Is Inconsistent with Temporal Integration of Random EPSPs], J Neuroscience, January 1993, 13(1):334-350.

Bruno: /* 9 Dec */

2014-12-10T07:06:24Z

9 Dec

← Older revision		Revision as of 06:58, 10 December 2014
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	* DA chapter 1-4, 5.4		* DA chapter 1-4, 5.4
	* Karklin & Simoncelli, [[http://redwood.berkeley.edu/vs265/karklin-simoncelli.pdf Efficient coding of natural images with a population of noisy Linear-Nonlinear neurons], NIPS 2011.		* Karklin & Simoncelli, [[http://redwood.berkeley.edu/vs265/karklin-simoncelli.pdf Efficient coding of natural images with a population of noisy Linear-Nonlinear neurons], NIPS 2011.
	* Chris Eliasmith, Charlie Anderson, [http://books.google.com/books?id=J6jz9s4kbfIC Neural Engineering: Computation, Representation, and Dynamics in Neurobiological Systems], MIT Press, 2004. 'Chapter 4 will be emailed to the class.'		* Chris Eliasmith, Charlie Anderson, [http://books.google.com/books?id=J6jz9s4kbfIC Neural Engineering: Computation, Representation, and Dynamics in Neurobiological Systems], MIT Press, 2004. (Chapter 4 will be emailed to the class.)
	* Softky and Koch, [http://redwood.berkeley.edu/vs265/softky-koch-jn93.pdf The Highly Irregular Firing of Cortical Cells Is Inconsistent with Temporal Integration of Random EPSPs], J Neuroscience, January 1993, 13(1):334-350.		* Softky and Koch, [http://redwood.berkeley.edu/vs265/softky-koch-jn93.pdf The Highly Irregular Firing of Cortical Cells Is Inconsistent with Temporal Integration of Random EPSPs], J Neuroscience, January 1993, 13(1):334-350.
	* Mainen and Sejnowski, [http://redwood.berkeley.edu/vs265/mainen-sejnowski.pdf Reliability of Spike Timing in Neocortical Neurons], Science, Vol 268, 6 June 1995.		* Mainen and Sejnowski, [http://redwood.berkeley.edu/vs265/mainen-sejnowski.pdf Reliability of Spike Timing in Neocortical Neurons], Science, Vol 268, 6 June 1995.

Bruno: /* 9 Dec */

2014-12-10T07:05:41Z

9 Dec

← Older revision		Revision as of 06:57, 10 December 2014
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	* DA chapter 1-4, 5.4		* DA chapter 1-4, 5.4
	* Karklin & Simoncelli, [[http://redwood.berkeley.edu/vs265/karklin-simoncelli.pdf Efficient coding of natural images with a population of noisy Linear-Nonlinear neurons], NIPS 2011.		* Karklin & Simoncelli, [[http://redwood.berkeley.edu/vs265/karklin-simoncelli.pdf Efficient coding of natural images with a population of noisy Linear-Nonlinear neurons], NIPS 2011.
			* Chris Eliasmith, Charlie Anderson, [http://books.google.com/books?id=J6jz9s4kbfIC Neural Engineering: Computation, Representation, and Dynamics in Neurobiological Systems], MIT Press, 2004. 'Chapter 4 will be emailed to the class.'
	* Chris Eliasmith, Charlie Anderson, [http://books.google.com/books?id=J6jz9s4kbfIC Neural Engineering: Computation, Representation, and Dynamics in Neurobiological Systems], MIT Press, 2004.

	Chapter 4 will be emailed to the class.

	* Softky and Koch, [http://redwood.berkeley.edu/vs265/softky-koch-jn93.pdf The Highly Irregular Firing of Cortical Cells Is Inconsistent with Temporal Integration of Random EPSPs], J Neuroscience, January 1993, 13(1):334-350.		* Softky and Koch, [http://redwood.berkeley.edu/vs265/softky-koch-jn93.pdf The Highly Irregular Firing of Cortical Cells Is Inconsistent with Temporal Integration of Random EPSPs], J Neuroscience, January 1993, 13(1):334-350.
	* Mainen and Sejnowski, [http://redwood.berkeley.edu/vs265/mainen-sejnowski.pdf Reliability of Spike Timing in Neocortical Neurons], Science, Vol 268, 6 June 1995.		* Mainen and Sejnowski, [http://redwood.berkeley.edu/vs265/mainen-sejnowski.pdf Reliability of Spike Timing in Neocortical Neurons], Science, Vol 268, 6 June 1995.

Bruno at 22:56, 9 December 2014

2014-12-09T22:56:35Z

@@ Line 156: / Line 156: @@
 ==== 9 Dec ====
-* '''Reading''': '''DA''' chapter 1-4, 5.4
+Kalman filter:
 * Karklin & Simoncelli, [[http://redwood.berkeley.edu/vs265/karklin-simoncelli.pdf Efficient coding of natural images with a population of noisy Linear-Nonlinear neurons], NIPS 2011.

Bruno at 22:53, 9 December 2014

2014-12-09T22:53:44Z

← Older revision		Revision as of 22:45, 9 December 2014
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	** Kevin Murphy's [http://redwood.berkeley.edu/vs265/murphy-hmm.pdf HMM tutorial]		** Kevin Murphy's [http://redwood.berkeley.edu/vs265/murphy-hmm.pdf HMM tutorial]

	==== 4 ~~Nov~~ ====		==== 4 Dec ====

	* DA Chapter 10		* DA Chapter 10
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	* Shao & Cottrell paper on [http://redwood.berkeley.edu/vs265/hshan-nips06.pdf Recursive ICA], NIPS 2006.		* Shao & Cottrell paper on [http://redwood.berkeley.edu/vs265/hshan-nips06.pdf Recursive ICA], NIPS 2006.

			==== 9 Dec ====


	~~<!-- neural implementations~~
	* '''Reading''': '''DA''' chapter 1-4, 5.4		* '''Reading''': '''DA''' chapter 1-4, 5.4
	* Karklin & Simoncelli, [[http://redwood.berkeley.edu/vs265/karklin-simoncelli.pdf Efficient coding of natural images with a population of noisy Linear-Nonlinear neurons], NIPS 2011.		* Karklin & Simoncelli, [[http://redwood.berkeley.edu/vs265/karklin-simoncelli.pdf Efficient coding of natural images with a population of noisy Linear-Nonlinear neurons], NIPS 2011.
	~~-->~~

Bruno at 18:15, 2 December 2014

2014-12-02T18:15:46Z

← Older revision		Revision as of 18:07, 2 December 2014
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	** Kevin Murphy's [http://redwood.berkeley.edu/vs265/murphy-hmm.pdf HMM tutorial]		** Kevin Murphy's [http://redwood.berkeley.edu/vs265/murphy-hmm.pdf HMM tutorial]

	==== 21 Nov ====		==== 4 Nov ====

			* DA Chapter 10
	* [http://redwood.berkeley.edu/vs265/info-theory.pdf Information theory primer]		* [http://redwood.berkeley.edu/vs265/info-theory.pdf Information theory primer]
	* [http://redwood.berkeley.edu/vs265/handout-sparse-08.pdf Sparse coding and ICA handout]		* [http://redwood.berkeley.edu/vs265/handout-sparse-08.pdf Sparse coding and ICA handout]
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	* Jascha Sohl-Dickstein, [http://redwood.berkeley.edu/vs265/jascha-cookbook.pdf Natural gradient cookbook]		* Jascha Sohl-Dickstein, [http://redwood.berkeley.edu/vs265/jascha-cookbook.pdf Natural gradient cookbook]
	* Bell & Sejnowski, [http://redwood.berkeley.edu/vs265/tony-ica.pdf An Information-Maximization Approach to Blind Separation and Blind Deconvolution], Neural Comp, 1995.		* Bell & Sejnowski, [http://redwood.berkeley.edu/vs265/tony-ica.pdf An Information-Maximization Approach to Blind Separation and Blind Deconvolution], Neural Comp, 1995.
	* ~~Karklin &~~ Simoncelli, [[http://redwood.berkeley.edu/vs265/~~karklin~~-~~simoncelli~~.pdf ~~Efficient coding~~ of natural ~~images with a population of noisy Linear-Nonlinear neurons~~], ~~NIPS 2011~~.		* Simoncelli, Olshausen. [http://redwood.berkeley.edu/vs265/simoncelli01-reprint.pdf Natural Image Statistics and Neural Representation], Annu. Rev. Neurosci. 2001. 24:1193–216.
			* van Hateren & Ruderman [http://redwood.berkeley.edu/vs265/vanhateren-ruderman98.pdf Independent component analysis of natural image sequences], Proc. R. Soc. Lond. B (1998) 265. (blocked sparse coding/ICA of video)
	* Hyvarinen, Hoyer, Inki, [http://redwood.berkeley.edu/vs265/TICA.pdf Topographic Independent Component Analysis], Neural Comp, 2001.		* Hyvarinen, Hoyer, Inki, [http://redwood.berkeley.edu/vs265/TICA.pdf Topographic Independent Component Analysis], Neural Comp, 2001.
	* Karklin & Lewicki paper on [http://redwood.berkeley.edu/vs265/karklin-lewicki2003.pdf Learning Higher-Order Structure in Natural Images], Network 2003.		* Karklin & Lewicki paper on [http://redwood.berkeley.edu/vs265/karklin-lewicki2003.pdf Learning Higher-Order Structure in Natural Images], Network 2003.
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	~~<!-- ICA~~
	* Simoncelli, Olshausen. [http://redwood.berkeley.edu/vs265/simoncelli01-reprint.pdf Natural Image Statistics and Neural Representation], Annu. Rev. Neurosci. 2001. 24:1193–216.
	* van Hateren & Ruderman [http://redwood.berkeley.edu/vs265/vanhateren-ruderman98.pdf Independent component analysis of natural image sequences], Proc. R. Soc. Lond. B (1998) 265. (blocked sparse coding/ICA of video) -->
	<!-- neural implementations		<!-- neural implementations
	* '''Reading''': '''DA''' chapter 1-4, 5.4 -->		* '''Reading''': '''DA''' chapter 1-4, 5.4
			* Karklin & Simoncelli, [[http://redwood.berkeley.edu/vs265/karklin-simoncelli.pdf Efficient coding of natural images with a population of noisy Linear-Nonlinear neurons], NIPS 2011.
			-->

Bruno: /* 2 Dec */

2014-12-02T18:07:06Z

2 Dec

← Older revision		Revision as of 17:59, 2 December 2014
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	** E. Schneidman, M.J. Berry, R. Segev and W. Bialek,[http://www.nature.com/nature/journal/v440/n7087/full/nature04701.html Weak pairwise correlations imply strongly correlated network states in a neural population], Nature 4400 (7087) (2006), pp. 1007-1012.<br>		** E. Schneidman, M.J. Berry, R. Segev and W. Bialek,[http://www.nature.com/nature/journal/v440/n7087/full/nature04701.html Weak pairwise correlations imply strongly correlated network states in a neural population], Nature 4400 (7087) (2006), pp. 1007-1012.<br>
	** J. Shlens, G.D. Field, J.L. Gauthier, M.I. Grivich, D. Petrusca, A. Sher, A.M. Litke and E.J. Chichilnisky, [http://www.jneurosci.org/cgi/content/abstract/26/32/8254 The structure of multi-neuron firing patterns in primate retina], J Neurosci 260 (32) (2006), pp. 8254-8266.<br>		** J. Shlens, G.D. Field, J.L. Gauthier, M.I. Grivich, D. Petrusca, A. Sher, A.M. Litke and E.J. Chichilnisky, [http://www.jneurosci.org/cgi/content/abstract/26/32/8254 The structure of multi-neuron firing patterns in primate retina], J Neurosci 260 (32) (2006), pp. 8254-8266.<br>
	** U. Koster, J. Sohl-Dickstein, C.M. Gray, B.A. Olshausen, [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003684~~#pcbi-1003684-g007~~ Modeling higher-order correlations within Cortical Microcolumns], PLOS Computational Biology, July 2014.		** U. Koster, J. Sohl-Dickstein, C.M. Gray, B.A. Olshausen, [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003684 Modeling higher-order correlations within Cortical Microcolumns], PLOS Computational Biology, July 2014.
	* Kalman filter		* Kalman filter
	** Robbie Jacobs' [http://www.bcs.rochester.edu/people/robbie/jacobslab/cheat_sheet/sensoryIntegration.pdf notes on Kalman filter]		** Robbie Jacobs' [http://www.bcs.rochester.edu/people/robbie/jacobslab/cheat_sheet/sensoryIntegration.pdf notes on Kalman filter]

Bruno: /* 2 Dec */

2014-12-02T17:57:57Z

2 Dec

← Older revision		Revision as of 17:49, 2 December 2014
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	* Crick and Mitchison theory on 'unlearning' during sleep - [http://redwood.berkeley.edu/vs265/crick-mitchison-sleep.pdf paper]		* Crick and Mitchison theory on 'unlearning' during sleep - [http://redwood.berkeley.edu/vs265/crick-mitchison-sleep.pdf paper]
	* Application of Boltzmann machines to neural data analysis:<br>		* Application of Boltzmann machines to neural data analysis:<br>
	E. Schneidman, M.J. Berry, R. Segev and W. Bialek,[http://www.nature.com/nature/journal/v440/n7087/full/nature04701.html Weak pairwise correlations imply strongly correlated network states in a neural population], Nature 4400 (7087) (2006), pp. 1007-1012.<br>		** E. Schneidman, M.J. Berry, R. Segev and W. Bialek,[http://www.nature.com/nature/journal/v440/n7087/full/nature04701.html Weak pairwise correlations imply strongly correlated network states in a neural population], Nature 4400 (7087) (2006), pp. 1007-1012.<br>
	J. Shlens, G.D. Field, J.L. Gauthier, M.I. Grivich, D. Petrusca, A. Sher, A.M. Litke and E.J. Chichilnisky, [http://www.jneurosci.org/cgi/content/abstract/26/32/8254 The structure of multi-neuron firing patterns in primate retina], J Neurosci 260 (32) (2006), pp. 8254-8266.<br>		** J. Shlens, G.D. Field, J.L. Gauthier, M.I. Grivich, D. Petrusca, A. Sher, A.M. Litke and E.J. Chichilnisky, [http://www.jneurosci.org/cgi/content/abstract/26/32/8254 The structure of multi-neuron firing patterns in primate retina], J Neurosci 260 (32) (2006), pp. 8254-8266.<br>
	~~Urs paper~~		** U. Koster, J. Sohl-Dickstein, C.M. Gray, B.A. Olshausen, [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003684#pcbi-1003684-g007 Modeling higher-order correlations within Cortical Microcolumns], PLOS Computational Biology, July 2014.
			* Kalman filter
	* Robbie Jacobs' [http://www.bcs.rochester.edu/people/robbie/jacobslab/cheat_sheet/sensoryIntegration.pdf notes on Kalman filter]		** Robbie Jacobs' [http://www.bcs.rochester.edu/people/robbie/jacobslab/cheat_sheet/sensoryIntegration.pdf notes on Kalman filter]
	* [http://redwood.berkeley.edu/vs265/kalman.m kalman.m] demo script		** [http://redwood.berkeley.edu/vs265/kalman.m kalman.m] demo script
	* Greg Welch's [http://www.cs.unc.edu/~welch/kalman/kalmanIntro.html tutorial on Kalman filter]		** Greg Welch's [http://www.cs.unc.edu/~welch/kalman/kalmanIntro.html tutorial on Kalman filter]
	* [http://vision.ucla.edu/~doretto/projects/dynamic-textures.html Dynamic texture models]		** [http://vision.ucla.edu/~doretto/projects/dynamic-textures.html Dynamic texture models]
	* Kevin Murphy's [http://redwood.berkeley.edu/vs265/murphy-hmm.pdf HMM tutorial]		** Kevin Murphy's [http://redwood.berkeley.edu/vs265/murphy-hmm.pdf HMM tutorial]


	==== 21 Nov ====		==== 21 Nov ====