Difference between revisions of "VS212B"

From RedwoodCenter
Jump to navigationJump to search
 
(17 intermediate revisions by 2 users not shown)
Line 14: Line 14:
  
 
==== Week 1 (Olshausen) ====
 
==== Week 1 (Olshausen) ====
* '''Nov. 5 - The problem of vision; comparative vision; rods and cones.'''
+
* '''Nov. 4 - The problem of vision; comparative vision; rods and cones.'''
 
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
 
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
 
** Reading:  
 
** Reading:  
Line 21: Line 21:
 
*** Rodieck: Chapter 3
 
*** Rodieck: Chapter 3
  
* '''Nov. 7 - Phototransduction; photoreceptor renewal; dynamic range'''
+
* '''Nov. 6 - Phototransduction; photoreceptor renewal; dynamic range'''
 
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
 
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
 
** Reading:  
 
** Reading:  
Line 27: Line 27:
  
 
==== Week 2 (Olshausen) ====
 
==== Week 2 (Olshausen) ====
* '''Nov. 14 - Retinal information processing; scale-invariant sampling lattice'''
+
* '''Nov. 11 - (Veteran's Day Holiday)'''
 +
* '''Nov. 13 - Retinal information processing; scale-invariant sampling lattice'''
 
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]  
 
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]  
 
** Reading:
 
** Reading:
Line 37: Line 38:
  
 
==== Week 3 (Olshausen) ====
 
==== Week 3 (Olshausen) ====
* '''Nov. 19 - Sampling; receptive fields; optic nerve'''
+
* '''Nov. 18 - Sampling; receptive fields; optic nerve'''
 
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
 
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
 
** Reading:
 
** Reading:
Line 58: Line 59:
  
 
==== Week 4 (Silver) ====
 
==== Week 4 (Silver) ====
* '''Nov. 26 (4 - 6:30PM) - Extrastriate cortex / Visual attention'''
+
* '''Nov. 25 (4 - 6PM) - Extrastriate cortex'''
 
** Extrastriate cortex
 
** Extrastriate cortex
*** [http://redwood.berkeley.edu/VS212B/lecture_1_slides_2012.pdf Lecture slides]
+
*** [http://redwood.berkeley.edu/VS212B/lecture_1_slides_2013.pdf Lecture slides]
 
*** Supplemental readings (optional):
 
*** Supplemental readings (optional):
 
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
 
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
 
**** Fahle and Greenlee, Chapter 7, pp. 210-218
 
**** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Wolfe et al., Chapter 4, pp. 85-91; Chapter 7, pp. 204-206
+
**** Kandel et al., Chapter 28, pp. 621-628
 +
**** Wolfe et al., Chapter 4, pp. 85-91; Chapter 8, p. 240
 
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
 
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
 
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
 
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
Line 73: Line 75:
 
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
 
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
 
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]
 
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]
 +
 +
==== Week 5 (Silver) ====
 +
* '''Dec. 2 (4 - 6PM) - Visual attention'''
 
** Visual attention
 
** Visual attention
*** [http://redwood.berkeley.edu/VS212B/lecture_2_slides_2012.pdf Lecture slides]
+
*** [http://redwood.berkeley.edu/VS212B/lecture_2_slides_2013.pdf Lecture slides]
 
*** Supplemental readings (optional):
 
*** Supplemental readings (optional):
 
**** Fahle and Greenlee, Chapter 7, pp. 218-236
 
**** Fahle and Greenlee, Chapter 7, pp. 218-236
 
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
 
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 8, pp. 189-209
+
**** Wolfe et al., Chapter 7, pp. 187-218
 
*** Videos from lecture:
 
*** Videos from lecture:
 
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
 
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
Line 84: Line 89:
 
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
 
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
 
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
 
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Nov. 28 (4 - 6:30PM) - Visual attention / Experimental methods in visual neuroscience'''
+
* '''Dec. 4 (4 - 6PM) - Experimental methods in visual neuroscience'''
 
** Experimental methods in visual neuroscience
 
** Experimental methods in visual neuroscience
*** [http://redwood.berkeley.edu/VS212B/lecture_3_slides_2012.pdf Lecture slides]
+
*** [http://redwood.berkeley.edu/VS212B/lecture_3_slides_2013.pdf Lecture slides]
 
*** Supplemental readings (optional):
 
*** Supplemental readings (optional):
 
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
 
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
 +
**** [http://redwood.berkeley.edu/VS212B/lopes_da_silva_2013.pdf Lopes da Silva (2013) "EEG and MEG: Relevance to neuroscience" Neuron 80:1111-1128]
 
*** Videos from lecture:
 
*** Videos from lecture:
 
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
 
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
Line 94: Line 100:
 
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
 
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
 
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
 
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
+
**** [http://redwood.berkeley.edu/VS212B/SubML_BrainInflation.mp4 cortical inflation and flattening movie]
 
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
 
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
 
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
 
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
Line 102: Line 108:
 
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]
 
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]
  
==== Week 5 (Silver) ====
+
==== Week 6 (Silver) ====
* '''Dec. 3 (4 - 6:30PM) - Experimental methods in visual neuroscience / Visual cortical development and plasticity'''
+
* '''Dec. 11 (4 - 6PM) - Visual cortical development and plasticity'''
 
<!--
 
<!--
** [http://redwood.berkeley.edu/VS212B/nov28_2011_lecture_slides.pdf Lecture slides]
+
** [http://redwood.berkeley.edu/VS212B/lecture_4_slides_2013.pdf Lecture slides]
 
** Supplemental readings (optional):
 
** Supplemental readings (optional):
 
*** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
 
*** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
Line 121: Line 127:
 
*** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]
 
*** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]
 
-->
 
-->
** [http://redwood.berkeley.edu/VS212B/nov30_2011_lecture_slides.pdf Lecture slides]
+
** [http://redwood.berkeley.edu/VS212B/lecture_4_slides_2013.pdf Lecture slides]
 
** Visual cortical development and plasticity
 
** Visual cortical development and plasticity
 
*** Supplemental readings (optional):
 
*** Supplemental readings (optional):
 
**** Fahle and Poggio, Introduction, pp. ix-xix
 
**** Fahle and Poggio, Introduction, pp. ix-xix
**** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72  
+
**** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72; Chapter 8, pp. 129-140
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1063-1066; Chapter 56, pp. 1115-1127
+
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1218-1221; Chapter 56, pp. 1259-1274
 
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
 
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
 +
**** [http://redwood.berkeley.edu/VS212B/kirkby_et_al_2013.pdf Kirkby, Sack, Firl, and Feller (2013) "A role for correlated spontaneous activity in the assembly of neural circuits" Neuron 80:1129-1144]
 
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
 
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
 
*** Video from lecture:
 
*** Video from lecture:
 
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]
 
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

Latest revision as of 05:44, 10 December 2013

Reading and other resources

  • Rodieck, "First steps in seeing"
  • Wandell, "Foundations of Vision"
  • WEBVISION (online resource)
  • Books on reserve in Optometry library:
    • Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
    • Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
    • Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
    • Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
    • Eric Kandel, et al. (2013, 5th edition) Principles of Neural Science
    • Jeremy Wolfe, et al. (2012, 3rd edition) Sensation and Perception

Syllabus

Week 1 (Olshausen)

  • Nov. 6 - Phototransduction; photoreceptor renewal; dynamic range
    • Lecture slides
    • Reading:
      • Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

Week 2 (Olshausen)

Week 3 (Olshausen)

  • Lab 2 - natural image statistics and efficient coding

Week 4 (Silver)

Week 5 (Silver)

Week 6 (Silver)