Difference between revisions of "VS212B"

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==== Week 1 (Olshausen) ====
 
==== Week 1 (Olshausen) ====
* '''Nov. 5 - The problem of vision; comparative vision; rods and cones.'''
+
* '''Nov. 4 - The problem of vision; comparative vision; rods and cones.'''
 
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
 
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
 
** Reading:  
 
** Reading:  
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*** Rodieck: Chapter 3
 
*** Rodieck: Chapter 3
  
* '''Nov. 7 - Phototransduction; photoreceptor renewal; dynamic range'''
+
* '''Nov. 6 - Phototransduction; photoreceptor renewal; dynamic range'''
 
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
 
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
 
** Reading:  
 
** Reading:  
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==== Week 2 (Olshausen) ====
 
==== Week 2 (Olshausen) ====
* '''Nov. 14 - Retinal information processing; scale-invariant sampling lattice'''
+
* '''Nov. 11 - (Veteran's Day Holiday)'''
 +
* '''Nov. 13 - Retinal information processing; scale-invariant sampling lattice'''
 
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]  
 
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]  
 
** Reading:
 
** Reading:
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==== Week 3 (Olshausen) ====
 
==== Week 3 (Olshausen) ====
* '''Nov. 19 - Sampling; receptive fields; optic nerve'''
+
* '''Nov. 18 - Sampling; receptive fields; optic nerve'''
 
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
 
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
 
** Reading:
 
** Reading:
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* '''Nov. 25 (4 - 6PM) - Extrastriate cortex'''
 
* '''Nov. 25 (4 - 6PM) - Extrastriate cortex'''
 
** Extrastriate cortex
 
** Extrastriate cortex
*** [Xhttp://redwood.berkeley.edu/VS212B/lecture_1_slides_2012.pdf Lecture slides]
+
*** [http://redwood.berkeley.edu/VS212B/lecture_1_slides_2013.pdf Lecture slides]
 
*** Supplemental readings (optional):
 
*** Supplemental readings (optional):
 
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
 
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
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* '''Dec. 2 (4 - 6PM) - Visual attention'''
 
* '''Dec. 2 (4 - 6PM) - Visual attention'''
 
** Visual attention
 
** Visual attention
*** [http://redwood.berkeley.edu/VS212B/lecture_2_slides_2012.pdf Lecture slides]
+
*** [http://redwood.berkeley.edu/VS212B/lecture_2_slides_2013.pdf Lecture slides]
 
*** Supplemental readings (optional):
 
*** Supplemental readings (optional):
 
**** Fahle and Greenlee, Chapter 7, pp. 218-236
 
**** Fahle and Greenlee, Chapter 7, pp. 218-236
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* '''Dec. 4 (4 - 6PM) - Experimental methods in visual neuroscience'''
 
* '''Dec. 4 (4 - 6PM) - Experimental methods in visual neuroscience'''
 
** Experimental methods in visual neuroscience
 
** Experimental methods in visual neuroscience
*** [http://redwood.berkeley.edu/VS212B/lecture_3_slides_2012.pdf Lecture slides]
+
*** [http://redwood.berkeley.edu/VS212B/lecture_3_slides_2013.pdf Lecture slides]
 
*** Supplemental readings (optional):
 
*** Supplemental readings (optional):
 
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
 
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
 +
**** [http://redwood.berkeley.edu/VS212B/lopes_da_silva_2013.pdf Lopes da Silva (2013) "EEG and MEG: Relevance to neuroscience" Neuron 80:1111-1128]
 
*** Videos from lecture:
 
*** Videos from lecture:
 
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
 
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
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**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
 
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
 
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
 
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
+
**** [http://redwood.berkeley.edu/VS212B/SubML_BrainInflation.mp4 cortical inflation and flattening movie]
 
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
 
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
 
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
 
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
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**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]
 
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]
  
 +
==== Week 6 (Silver) ====
 
* '''Dec. 11 (4 - 6PM) - Visual cortical development and plasticity'''
 
* '''Dec. 11 (4 - 6PM) - Visual cortical development and plasticity'''
 
<!--
 
<!--
** [http://redwood.berkeley.edu/VS212B/nov28_2011_lecture_slides.pdf Lecture slides]
+
** [http://redwood.berkeley.edu/VS212B/lecture_4_slides_2013.pdf Lecture slides]
 
** Supplemental readings (optional):
 
** Supplemental readings (optional):
 
*** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
 
*** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
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*** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]
 
*** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]
 
-->
 
-->
** [http://redwood.berkeley.edu/VS212B/nov30_2011_lecture_slides.pdf Lecture slides]
+
** [http://redwood.berkeley.edu/VS212B/lecture_4_slides_2013.pdf Lecture slides]
 
** Visual cortical development and plasticity
 
** Visual cortical development and plasticity
 
*** Supplemental readings (optional):
 
*** Supplemental readings (optional):
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**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1218-1221; Chapter 56, pp. 1259-1274
 
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1218-1221; Chapter 56, pp. 1259-1274
 
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
 
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
 +
**** [http://redwood.berkeley.edu/VS212B/kirkby_et_al_2013.pdf Kirkby, Sack, Firl, and Feller (2013) "A role for correlated spontaneous activity in the assembly of neural circuits" Neuron 80:1129-1144]
 
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
 
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
 
*** Video from lecture:
 
*** Video from lecture:
 
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]
 
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

Latest revision as of 05:44, 10 December 2013

Reading and other resources

  • Rodieck, "First steps in seeing"
  • Wandell, "Foundations of Vision"
  • WEBVISION (online resource)
  • Books on reserve in Optometry library:
    • Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
    • Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
    • Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
    • Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
    • Eric Kandel, et al. (2013, 5th edition) Principles of Neural Science
    • Jeremy Wolfe, et al. (2012, 3rd edition) Sensation and Perception

Syllabus

Week 1 (Olshausen)

  • Nov. 6 - Phototransduction; photoreceptor renewal; dynamic range
    • Lecture slides
    • Reading:
      • Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

Week 2 (Olshausen)

Week 3 (Olshausen)

  • Lab 2 - natural image statistics and efficient coding

Week 4 (Silver)

Week 5 (Silver)

Week 6 (Silver)