# VS265: Reading Fall2010: Difference between revisions

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==== 16 Nov ==== | ==== 16 Nov ==== | ||

* [http://redwood.berkeley.edu/ | * [http://redwood.berkeley.edu/vs265/info-theory.pdf Information theory primer] | ||

* [http://redwood.berkeley.edu/ | * [http://redwood.berkeley.edu/vs265/handout-sparse-08.pdf Sparse coding and ICA handout] | ||

* Bell and Sejnowski, [http://redwood.berkeley.edu/ | * Bell and Sejnowski, [http://redwood.berkeley.edu/vs265/tony-ica.pdf An Information-Maximization Approach to Blind Separation and Blind Deconvolution], Neural Comp, 1995. | ||

* Hyvarinen, Hoyer, Inki, [http://redwood.berkeley.edu/ | * Hyvarinen, Hoyer, Inki, [http://redwood.berkeley.edu/vs265/TICA.pdf Topographic Independent Component Analysis], Neural Comp, 2001. |

## Revision as of 22:57, 16 November 2010

#### 26 Aug

- Dreyfus, H.L. and Dreyfus, S.E.
*Making a Mind vs. Modeling the Brain: Artificial Intelligence Back at a Branchpoint*. Daedalus, Winter 1988. - Bell, A.J.
*Levels and loops: the future of artificial intelligence and neuroscience*. Phil Trans: Bio Sci.**354**:2013--2020 (1999) here or here

Optional:

- Land, MF and Fernald, RD. The Evolution of Eyes, Ann Revs Neuro, 1992.

#### 31 Aug

- Mead, C. Chapter 1: Introduction and Chapter 4: Neurons from
*Analog VLSI and Neural Systems*, Addison-Wesley, 1989. - Linear time-invariant systems and convolution
- Simulating differential equations
- Dynamics
- Carandini M, Heeger D (1994) Summation and division by neurons in primate visual cortex. Science, 264: 1333-1336.

#### 02 Sep

- Jordan, M.I. An Introduction to Linear Algebra in Parallel Distributed Processing in McClelland and Rumelhart,
*Parallel Distributed Processing*, MIT Press, 1985. - Linear neuron models
- Linear algebra primer

#### 07 Sep

- Handout on supervised learning in single-stage feedforward networks
- Handout on supervised learning in multi-layer feedforward networks - "backpropagation"
- Y. LeCun, L. Bottou, G. Orr, and K. Muller (1998) "Efficient BackProp," in Neural Networks: Tricks of the trade, (G. Orr and Muller K., eds.).
- NetTalk demo

#### 21 Sep

- Handout: Hebbian learning and PCA
**HKP**Chapters 8 and 9**PDP**Chapter 9 (full text of Michael Jordan's tutorial on linear algebra, including section on eigenvectors)

Optional:

- Atick, Redlich. What does the retina know about natural scenes?, Neural Computation, 1992.
- Dan, Atick, Reid. Efficient Coding of Natural Scenes in the Lateral Geniculate Nucleus: Experimental Test of a Computational Theory, J Neuroscience, 1996.

#### 28 Sep

- Foldiak, P. Forming sparse representations by local anti-Hebbian learning. Biol. Cybern. 64, 165-170 (1990).
- Olshausen BA, Field DJ. Emergence of simple-cell receptive field properties by learning a sparse code for natural images, Nature, 381: 607-609. (1996)

Optional readings:

- Rozell, Johnson, Baraniuk, Olshausen. Sparse Coding via Thresholding and Local Competition in Neural Circuits, Neural Computation 20, 2526–2563 (2008).
- Simoncelli, Olshausen. Natural Image Statistics and Neural Representation, Annu. Rev. Neurosci. 2001. 24:1193–216.
- Smith, Lewicki. Efficient auditory coding, Nature Vol 439 (2006).

#### 5 Oct

- Ocular dominance column development: Analysis and simulation by Miller, Keller and Stryker.
- A dimension reduction framework for understanding cortical maps by R. Durbin and G. Mitchison.
- The cortical column: a structure without a function by Jonathan C. Horton and Daniel L. Adams

Here are some additional links to papers mentioned in lecture. Optional reading:

- Gary Blasdel, Orientation selectivity, preference, and continuity in monkey striate cortex., J Neurosci, 1992. Another source of many of nice images are in the galleries on Amiram Grinvald's site: [1]

- From Clay Reid's lab, Functional imaging with cellular resolution reveals precise micro-architecture in visual cortex. Make sure you look at the supplementary material and videos on their web site (seems partly broken) [2].

#### 7 Oct

- A Global Geometric Framework for Nonlinear Dimensionality Reduction , Tenenbaum et al., Science 2000.
- Nonlinear Dimensionality Reduction by Locally Linear Embedding, Roweis and Saul, Science 2000.
- On the Local Behavior of Spaces of Natural Images, Carlsson et al., Int J Comput Vis (2008) 76: 1–12.

Additional reading:

- Adaptation to natural facial categories, Michael A. Webster, Daniel Kaping, Yoko Mizokami & Paul Duhamel, Nature, 2004.
- Prototype-referenced shape encoding revealed by high-level aftereffects, David A. Leopold, Alice J. O’Toole, Thomas Vetter and Volker Blanz, Nature, 2001.

#### 12/14 Oct

- Handout on attractor neural networks
- original Hopfield (1982) paper
- Hopfield (1984) paper
- Marr-Poggio stereo algorithm paper
- Kechen Zhang paper on bump circuits
- Olshausen, Anderson & Van Essen, dynamic routing circuit model
- HKP Chapters 2 and 3

#### 19 Oct

- manual for David Zipser's BPTT simulator

#### 26 Oct

#### 2/4 Nov

- HKP Chapter 7, section 7.1

Application to neural data analysis:

- E. Schneidman, M.J. Berry, R. Segev and W. Bialek,Weak pairwise correlations imply strongly correlated network states in a neural population, Nature 4400 (7087) (2006), pp. 1007-1012.
- J. Shlens, G.D. Field, J.L. Gauthier, M.I. Grivich, D. Petrusca, A. Sher, A.M. Litke and E.J. Chichilnisky, The structure of multi-neuron firing patterns in primate retina, J Neurosci 260 (32) (2006), pp. 8254-8266.

#### 16 Nov

- Information theory primer
- Sparse coding and ICA handout
- Bell and Sejnowski, An Information-Maximization Approach to Blind Separation and Blind Deconvolution, Neural Comp, 1995.
- Hyvarinen, Hoyer, Inki, Topographic Independent Component Analysis, Neural Comp, 2001.