View source for Seminars

== Instructions ==

# Check the internal calendar (here) for a free seminar slot. Seminars are usually Wednesdays at noon, but it is flexible in case there is a day that works better for the speaker.  However, it is usually best to avoid booking multiple speakers in the same week - it leads to "seminar burnout" and reduced attendance.  But use your own judgement here - if its a good opportunity and that's the only time that works then go ahead with it.
# Fill in the speaker information in the 'tentative/confirmed speaker' section. Leave the status flag in 'tentative'. Please include your name and email as ''host''  in case somebody wants to contact you.
# Once the invitation is confirmed with the speaker, change the status flag to 'confirmed'. Notify Jimmy [mailto:cmwang@berkeley.edu] that we have a confirmed speaker so that he can update the public web page. Please include a title and abstract.
# Jimmy or Kati will also send out an announcement.  
# If the speaker needs accommodations you should contact Kati [mailto:ksmarkow@berkeley.edu] to reserve a room at the faculty club.
# During the visit you will need to look after the visitor, schedule visits with other labs, make plans for lunch, dinner, etc., and introduce at the seminar (don't ask Bruno to do this at the last moment).
# After the seminar have the speaker submit travel expenses to Jadine Palapaz [mailto:jpalapaz@berkeley.edu] at RES for reimbursement.  You can get a travel reimbursement form [http://res.berkeley.edu/res/forms.cfm online] and give to the speaker so they can submit everything before they leave if they have all their receipts on hand, otherwise they can mail it in afterwards.

== Tentative / Confirmed Speakers ==

'''18 Nov 2010'''  (note: on Thursday because SFN is Nov. 13-17)
* Speaker: Dan Butts
* Affiliation: UMD
* Host: Fritz
* Status: Tentative
* Title: 
* Abstract:

'''24 Nov 2010'''
* Speaker:  Eizaburo Doi
* Affiliation: NYU
* Host: Jimmy
* Status: Confirmed
* Title: 
* Abstract:

'''1 Dec 2010'''
* Speaker: Gadi Geiger
* Affiliation: MIT
* Host: Fritz
* Status: Confirmed
* Title: Visual and Auditory Perceptual Modes that Characterize Dyslexics
* Abstract: I will describe how dyslexics’ visual and auditory perception is wider and more diffuse than that of typical readers. This suggests wider neural tuning in dyslexics. In addition I will describe how this processing relates to difficulties in reading. Strengthening the argument and more so helping dyslexics I will describe a regimen of practice that results in improved reading in dyslexics while narrowing perception.

'''8 Dec 2010'''
* Speaker: NIPS 06 - 09
* Affiliation: 
* Host: 
* Status: Tentative / Confirmed
* Title: 
* Abstract:

'''13 Dec 2010'''
* Speaker: Jorg Lueke
* Affiliation: FIAS
* Host: Bruno
* Status: Confirmed
* Title: Linear and Non-linear Approaches to Component Extraction and Their Applications to Visual Data
* Abstract:  In the nervous system of humans and animals, sensory data are represented as combinations of elementary data components. While for data such as sound waveforms the elementary components combine linearly, other data can better be modeled by non-linear forms of component superpositions. I motivate and discuss two models with binary latent variables: one using standard linear superpositions of basis functions and one using non-linear superpositions.  Crucial for the applicability of both models are efficient learning procedures. I briefly introduce a novel training scheme (ET) and show how it can be applied to probabilistic generative models. For linear and non-linear models the scheme efficiently infers the basis functions as well as the level of sparseness and data noise.  In large-scale applications to image patches, we show results on the statistics of inferred model parameters. Differences between the linear and non-linear models are discussed, and both models are compared to results of standard approaches in the literature and to experimental findings.  Finally, I briefly discuss learning in a recent model that takes explicit component occlusions into account.


'''15 Dec 2010'''
* Speaker: Claudia Clopath
* Affiliation: Universite Paris Decartes
* Host: Fritz
* Status: Confirmed
* Title: 
* Abstract:

'''22 Dec 2010'''
* Speaker: 
* Affiliation: 
* Host: 
* Status: Tentative / Confirmed
* Title: 
* Abstract:

'''29 Dec 2010'''
* Speaker: 
* Affiliation: 
* Host: 
* Status: Tentative / Confirmed
* Title: 
* Abstract:

'''26 Jan 2011'''
* Speaker: Ernst Niebur
* Affiliation: Johns Hopkins U
* Host: Fritz
* Status: Confirmed 
* Title: 
* Abstract:

'''23 Feb 2011'''
* Speaker: Alan Litke
* Affiliation: UC Santa Cruz / CERN
* Host: Amir
* Status: Tentative 
* Title: 
* Abstract:

'''16 March 2011'''
* Speaker: Vladimir Itskov
* Affiliation: University of Nebraska-Lincoln
* Host: Chris
* Status: Confirmed 
* Title: 
* Abstract:

'''23 March 2011'''
* Speaker: Bruce Cumming
* Affiliation: National Institutes of Health
* Host: Ivana
* Status: Tentative 
* Title: TBD
* Abstract:

== Previous Seminars ==

=== 2010/11 academic year ===

'''02 Sep 2010'''
* Speaker: Johannes Burge
* Affiliation: University of Texas at Austin
* Host: Jimmy
* Status: Confirmed
* Title: 
* Abstract:

'''8 Sep 2010'''
* Speaker: Tobi Szuts
* Affiliation: Meister Lab/ Harvard U.
* Host: Mike DeWeese
* Status: Confirmed
* Title: Wireless recording of neural activity in the visual cortex of a freely moving rat.
* Abstract: Conventional neural recording systems restrict behavioral experiments to a flat indoor environment compatible with the cable that tethers the subject to the recording instruments. To overcome these constraints, we developed a wireless multi-channel system for recording neural signals from a freely moving animal the size of a rat or larger. The device takes up to 64 voltage signals from implanted electrodes, samples each at 20 kHz, time-division multiplexes them onto a single output line, and transmits that output by radio frequency to a receiver and recording computer up to >60 m away. The system introduces less than 4 ?V RMS of electrode-referred noise, comparable to wired recording systems and considerably less than biological noise. The system has greater channel count or transmission distance than existing telemetry systems. The wireless system has been used to record from the visual cortex of a rat during unconstrained conditions. Outdoor recordings show V1 activity is modulated by nest-building activity. During unguided behavior indoors, neurons responded rapidly and consistently to changes in light level, suppressive effects were prominent in response to an illuminant transition, and firing rate was strongly modulated by locomotion. Neural firing in the visual cortex is relatively sparse and moderate correlations are observed over large distances, suggesting that synchrony is driven by global processes.

'''29 Sep 2010'''
* Speaker: Vikash Gilja
* Affiliation: Stanford University
* Host: Charles
* Status: Confirmed
* Title: Towards Clinically Viable Neural Prosthetic Systems.
* Abstract:

'''20 Oct 2010'''
* Speaker: Alexandre Francois
* Affiliation: USC
* Host: 
* Status: Confirmed
* Title: 
* Abstract:

'''3 Nov 2010'''
* Speaker: Eric Jonas and Vikash Mansinghka
* Affiliation:  Navia Systems
* Host: Jascha
* Status: Confirmed
* Title: Natively Probabilistic Computation: Principles, Artifacts, Architectures and Applications
* Abstract: Complex probabilistic models and Bayesian inference are becoming
increasingly critical across science and industry, especially in
large-scale data analysis. They are also central to our best
computational accounts of human cognition, perception and action.
However, all these efforts struggle with the infamous curse of
dimensionality. Rich probabilistic models can seem hard to write and
even harder to solve, as specifying and calculating probabilities
often appears to require the manipulation of exponentially (and
sometimes infinitely) large tables of numbers.

We argue that these difficulties reflect a basic mismatch between the
needs of probabilistic reasoning and the deterministic, functional
orientation of our current hardware, programming languages and CS
theory. To mitigate these issues, we have been developing a stack of
abstractions for natively probabilistic computation, based around
stochastic simulators (or samplers) for distributions, rather than
evaluators for deterministic functions. Ultimately, our aim is to
produce a model of computation and the associated hardware and
programming tools that are as suited for uncertain inference and
decision-making as our current computers are for precise arithmetic.

In this talk, we will give an overview of the entire stack of
abstractions supporting natively probabilistic computation, with
technical detail on several hardware and software artifacts we have
implemented so far. we will also touch on some new theoretical results
regarding the computational complexity of probabilistic programs.
Throughout, we will motivate and connect this work to some current
applications in biomedical data analysis and computer vision, as well
as potential hypotheses regarding the implementation of probabilistic
computation in the brain.

This talk includes joint work with Keith Bonawitz, Beau Cronin,
Cameron Freer, Daniel Roy and Joshua Tenenbaum.

BRIEF BIOGRAPHY

Vikash Mansinghka is a co-founder and the CTO of Navia Systems, a
venture-funded startup company building natively probabilistic
computing machines. He spent 10 years at MIT, eventually earning an
SB. in Mathematics, an SB. in Computer Science, an MEng in Computer
Science, and a PhD in Computation. He held graduate fellowships from
the NSF and MIT's Lincoln Laboratories, and his PhD dissertation won
the 2009 MIT George M. Sprowls award for best dissertation in computer
science. He currently serves on DARPA's Information Science and
Technology (ISAT) Study Group.

Eric Jonas is a co-founder of Navia Systems, responsible for in-house
accelerated inference research and development. He spent ten years at
MIT, where he earned SB degrees in electrical engineering and computer
science and neurobiology, an MEng in EECS, with a neurobiology PhD
expected really soon.  He’s passionate about biological applications
of probabilistic reasoning and hopes to use Navia’s capabilities to
combine data from biological science, clinical histories, and patient
outcomes into seamless models.

'''8 Nov 2010'''
* Speaker: Patrick Ruther
* Affiliation:  Imtek, University of Freiburg
* Host: Tim
* Status: Confirmed
* Title: TBD
* Abstract: TBD

'''10 Nov 2010'''
* Speaker: Aurel Lazar
* Affiliation: Department of Electrical Engineering, Columbia University
* Host: Bruno
* Status: Confirmed
* Title: Encoding Visual Stimuli with a Population of Hodgkin-Huxley Neurons
* Abstract: We first present a general framework for the reconstruction of natural video
scenes encoded with a population of spiking neural circuits with random thresholds.
The visual encoding system consists of a bank of filters, modeling the visual
receptive fields, in cascade with a population of neural circuits, modeling encoding
with spikes in the early visual system.
The neuron models considered include integrate-and-fire neurons and ON-OFF
neuron pairs with threshold-and-fire spiking mechanisms. All thresholds are assumed
to be random. We show that for both time-varying and space-time-varying stimuli neural
spike encoding is akin to taking noisy measurements on the stimulus.
Second, we formulate the reconstruction problem as the minimization of a
suitable cost functional in a finite-dimensional vector space and provide an explicit
algorithm for stimulus recovery. We also present a general solution using the theory of
smoothing splines in Reproducing Kernel Hilbert Spaces. We provide examples of both
synthetic video as well as for natural scenes and show that the quality of the
reconstruction degrades gracefully as the threshold variability of the neurons increases.
Third, we demonstrate a number of simple operations on the original visual stimulus
including translations, rotations and zooming. All these operations are natively executed
in the spike domain. The processed spike trains are decoded for the faithful recovery
of the stimulus and its transformations.
Finally, we extend the above results to neural encoding circuits built with Hodking-Huxley
neurons.
References:
Aurel A. Lazar, Eftychios A. Pnevmatikakis and Yiyin Zhou,
Encoding Natural Scenes with Neural Circuits with Random Thresholds, Vision Research, 2010,
Special Issue on Mathematical Models of Visual Coding,
http://dx.doi.org/10.1016/j.visres.2010.03.015
Aurel A. Lazar,
Population Encoding with Hodgkin-Huxley Neurons,
IEEE Transactions on Information Theory, Volume 56, Number 2, pp. 821-837, February, 2010,
Special Issue on Molecular Biology and Neuroscience,
http://dx.doi.org/10.1109/TIT.2009.2037040

'''11 Nov 2010''' (UCB holiday)
* Speaker: Martha Nari Havenith
* Affiliation: UCL
* Host: Fritz
* Status: Confirmed
* Title: Finding spike timing in the visual cortex - Oscillations as the internal clock of vision?
* Abstract:

=== 2009/10 academic year ===

'''2 September 2009''' 
* Speaker: Keith Godfrey
* Affiliation: University of Cambridge
* Host: Tim
* Status: Confirmed
* Title: TBA
* Abstract:

'''7 October 2009'''
* Speaker: Anita Schmid
* Affiliation: Cornell University
* Host: Kilian
* Status: Confirmed
* Title: Subpopulations of neurons in visual area V2 perform differentiation and integration operations in space and time
* Abstract: The interconnected areas of the visual system work together to find object boundaries in visual scenes. Primary visual cortex (V1) mainly extracts oriented luminance boundaries, while secondary visual cortex (V2) also detects boundaries defined by differences in texture. How the outputs of V1 neurons are combined to allow for the extraction of these more complex boundaries in V2 is as of yet unclear. To address this question, we probed the processing of orientation signals in single neurons in V1 and V2, focusing on response dynamics of neurons to patches of oriented gratings and to combinations of gratings in neighboring patches and sequential time frames. We found two kinds of response dynamics in V2, both of which are different from those of V1 neurons. While V1 neurons in general prefer one orientation, one subpopulation of V2 neurons (“transient”) shows a temporally dynamic preference, resulting in a preference for changes in orientation. The second subpopulation of V2 neurons (“sustained”) responds similarly to V1 neurons, but with a delay. The dynamics of nonlinear responses to combinations of gratings reinforce these distinctions: the dynamics enhance the preference of V1 neurons for continuous orientations, and enhance the preference of V2 transient neurons for discontinuous ones. We propose that transient neurons in V2 perform a differentiation operation on the V1 input, both spatially and temporally, while the sustained neurons perform an integration operation. We show that a simple feedforward network with delayed inhibition can account for the temporal but not for the spatial differentiation operation.

'''28 October 2009'''
* Speaker: Andrea Benucci
* Affiliation: Institute of Ophthalmology, University College London
* Host: Bruno
* Status: Confirmed
* Title: Stimulus dependence of the functional connectivity between neurons in primary visual cortex
* Abstract:  It is known that visual stimuli are encoded by the concerted activity of large populations of neurons in visual cortical areas. However, it is only recently that recording techniques have been made available to study such activations from large ensembles of neurons simultaneously, with millisecond temporal precision and tens of microns spatial resolution. I will present data from voltage-sensitive dye (VSD) imaging and multi-electrode recordings (“Utah” probes) from the primary visual cortex of the cat (V1).  I will discuss the relationship between two fundamental cortical maps of the visual system: the map of retinotopy and the map of orientation. Using spatially localized and full-field oriented stimuli, we studied the functional interdependency of these maps. I will describe traveling and standing waves of cortical activity and their key role as a dynamical substrate for the spatio-temporal coding of visual information.  I will further discuss the properties of the spatio-temporal code in the context of continuous visual stimulation.  While recording population responses to a sequence of oriented stimuli, we asked how responses to individual stimuli summate over time. We found that such rules are mostly linear, supporting the idea that spatial and temporal codes in area V1 operate largely independently. However, these linear rules of summation fail when the visual drive is removed, suggesting that the visual cortex can readily switch between a dynamical regime where either feed-forward or intra-cortical inputs determine the response properties of the network.

'''12 November 2009 (Thursday)'''
* Speaker: Song-Chun Zhu
* Affiliation: UCLA
* Host: Jimmy
* Status: Confirmed
* Title: 
* Abstract:

'''18 November 2009'''
* Speaker: Dan Graham
* Affiliation: Dept. of Mathematics, Dartmouth College
* Host: Bruno
* Status: Confirmed
* Title: The Packet-Switching Brain: A Hypothesis
* Abstract: Despite great advances in our understanding of neural responses to natural stimuli, the basic structure of the neural code remains elusive. In this talk, I will describe a novel hypothesis regarding the fundamental structure of neural coding in mammals. In particular, I propose that an internet-like routing architecture (specifically packet-switching) underlies neocortical processing, and I propose means of testing this hypothesis via neural response sparseness measurements. I will synthesize a host of suggestive evidence that supports this notion and will, more generally, argue in favor of a large scale shift from the now dominant “computer metaphor,” to the “internet metaphor.” This shift is intended to spur new thinking with regard to neural coding, and its main contribution is to privilege communication over computation as the prime goal of neural systems.

'''16 December 2009'''
* Speaker: Pietro Berkes
* Affiliation: Volen Center for Complex Systems, Brandeis University
* Host: Bruno
* Status: Confirmed
* Title: Generative models of vision: from sparse coding toward structured models
* Abstract: From a computational perspective, one can think of visual perception as the problem of analyzing the light patterns detected by the retina to recover their external causes.  This process requires combining the incoming sensory evidence with internal prior knowledge about general properties of visual elements and the way they interact, and can be formalized in a class of models known as causal generative models.  In the first part of the talk, I will discuss the first and most established generative model, namely the sparse coding model. Sparse coding has been largely successful in showing how the main characteristics of simple cells receptive fields can be accounted for based uniquely on the statistics of natural images. I will briefly review the evidence supporting this model, and contrast it with recent data from the primary visual cortex of ferrets and rats showing that the sparseness of neural activity over development and anesthesia seems to follow trends opposite to those predicted by sparse coding.  In the second part, I will argue that the generative point of view calls for models of natural images that take into account more of the structure of the visual environment. I will present a model that takes a first step in this direction by incorporating the fundamental distinction between identity and attributes of visual elements. After learning, the model mirrors several aspects of the organization of V1, and results in a novel interpretation of complex and simple cells as parallel population of cells, coding for different aspects of the visual input. Further steps toward more structured generative models might thus lead to the development of a more comprehensive account of visual processing in the visual cortex.

'''6 January 2010'''
* Speaker: Susanne Still
* Affiliation: U of Hawaii
* Host: Fritz
* Status: Confirmed
* Title: 
* Abstract:

'''20 January 2010'''
* Speaker: Tom Dean
* Affiliation: Google
* Host: Bruno
* Status: Confirmed
* Title: Accelerating Computer Vision and Machine Learning Algorithms with Graphics Processors
* Abstract: Graphics processors (GPUs) and massively-multi-core architectures are becoming more powerful, less costly and more energy efficient, and the related programming language issues are beginning to sort themselves out. That said most researchers don’t want to be writing code that depends on any particular architecture or parallel programming model. Linear algebra, Fourier analysis and image processing have standard libraries that are being ported to exploit SIMD parallelism in GPUs. We can depend on the massively-multiple-core machines du jour to support these libraries and on the high-performance-computing (HPC) community to do the porting for us or with us. These libraries can significantly accelerate important applications in image processing, data analysis and information retrieval. We can develop APIs and the necessary run-time support so that code relying on these libraries will run on any machine in a cluster of computers but exploit GPUs whenever available. This strategy allows us to move toward hybrid computing models that enable a wider range of opportunities for parallelism without requiring the special training of programmers or the disadvantages of developing code that depends on specialized hardware or programming models. This talk summarizes the state of the art in massively-multi-core architectures, presents experimental results that demonstrate the potential for significant performance gains in the two general areas of image processing and machine learning, provides examples of the proposed programming interface, and some more detailed experimental results on one particular problem involving video-content analysis.

'''27 January 2010'''
* Speaker: David Philiponna
* Affiliation: Paris
* Host: Bruno
* Status: Confirmed
* Title: 
* Abstract:

''''24 Feburary 2010'''
* Speaker: Gordon Pipa
* Affiliation: U Osnabrueck/MPI Frankfurt
* Host: Fritz
* Status: Confirmed
* Title: 
* Abstract:

'''3 March 2010'''
* Speaker: Gaute Einevoll
* Affiliation: UMB, Norway
* Host: Amir
* Status: Confirmed
* Title: TBA
* Abstract: TBA


'''4 March 2010'''
* Speaker: Harvey Swadlow
* Affiliation: 
* Host: Fritz
* Status: Confirmed
* Title: 
* Abstract:

'''8 April 2010'''
* Speaker: Alan Yuille 
* Affiliation: UCLA
* Host: Amir
* Status: Confirmed (for 1pm)
* Title: 
* Abstract:

'''28 April 2010'''
* Speaker: Dharmendra Modha - cancelled
* Affiliation: IBM
* Host:Fritz
* Status: Confirmed
* Title: 
* Abstract:

'''5 May 2010'''
* Speaker: David Zipser
* Affiliation: UCB
* Host: Daniel Little
* Status: Tentative
* Title: Brytes 2:
* Abstract:

Brytes are little brains that can be assembled into larger, smarter brains. In my first talk I presented a biologically plausible, computationally tractable model of brytes and described how they can be used as subunits to build brains with interesting behaviors.

In this talk I will first show how large numbers of brytes can cooperate to perform complicated actions such as arm and hand manipulations in the presence of obstacles. Then I describe a strategy for a higher level of control that informs each bryte what role it should play in accomplishing the current task. These results could have considerable significance for understanding the brain and possibly be applicable to robotics and BMI.

'''12 May 2010'''
* Speaker: Frank Werblin  (Redwood group meeting - internal only)
* Affiliation:  Berkeley
* Host: Bruno
* Status: Tentative
* Title: 
* Abstract:

'''19 May 2010'''
* Speaker: Anna Judith
* Affiliation: UCB
* Host: Daniel Little (Redwood Lab Meeting - internal only)
* Status: confirmed
* Title: 
* Abstract: