VS212B: Difference between revisions

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** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
** Eric Kandel, James Schwartz, and Tom Jessell (2000, 4th edition) Principles of Neural Science
** Eric Kandel, et al. (2013, 5th edition) Principles of Neural Science
** Jeremy Wolfe, et al. (2009, 2nd edition) Sensation and Perception
** Jeremy Wolfe, et al. (2012, 3rd edition) Sensation and Perception


=== Syllabus ===
=== Syllabus ===


==== Week 1 (Olshausen) ====
==== Week 1 (Olshausen) ====
* '''Nov. 5 - The problem of vision; comparative vision; rods and cones.'''
* '''Nov. 4 - The problem of vision; comparative vision; rods and cones.'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture1.pdf Lecture slides]
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides]
** Reading:  
** Reading:  
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Olshausen, [http://redwood.berkeley.edu/bruno/papers/CNS2010-chapter.pdf 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.]
*** Land & Fernald paper on [http://redwood.berkeley.edu/bruno/VS212B/land-fernald.pdf Evolution of Eyes],  
*** Land & Fernald paper on [http://redwood.berkeley.edu/VS212B/land-fernald.pdf Evolution of Eyes],  
*** Rodieck: Chapter 3
*** Rodieck: Chapter 3


* '''Nov. 7 - Phototransduction; photoreceptor renewal; dynamic range'''
* '''Nov. 6 - Phototransduction; photoreceptor renewal; dynamic range'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture2.pdf Lecture slides]
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides]
** Reading:  
** Reading:  
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)
*** Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)


==== Week 2 (Olshausen) ====
==== Week 2 (Olshausen) ====
* '''Nov. 14 - Retinal information processing; scale-invariant sampling lattice'''
* '''Nov. 11 - (Veteran's Day Holiday)'''
<!--
* '''Nov. 13 - Retinal information processing; scale-invariant sampling lattice'''
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture3.pdf Lecture slides]  
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides]  
** Reading:
** Reading:
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/bruno/VS212B/vanessen-anderson95.pdf Information Processing Strategies  and Pathways in the Primate Visual System]
*** Rodieck, Chapter3
*** Handout on [http://redwood.berkeley.edu/bruno/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*** Van Essen & Anderson article on [http://redwood.berkeley.edu/VS212B/vanessen-anderson95.pdf Information Processing Strategies  and Pathways in the Primate Visual System]
*** [http://redwood.berkeley.edu/bruno/VS212B/useful-numbers/ Useful numbers in vision science]
*** Handout on [http://redwood.berkeley.edu/VS212B/degrees-size.pdf Degrees, radians, retinal size and sampling]
*  [http://redwood.berkeley.edu/bruno/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice
*** [http://redwood.berkeley.edu/VS212B/useful-numbers/ Useful numbers in vision science]
-->
*  [http://redwood.berkeley.edu/VS212B/lab1/lab1.html Lab 1] - simulation of retinal sampling lattice
 
==== Week 3 (Olshausen) ====
==== Week 3 (Olshausen) ====
* '''Nov. 19 - Sampling; receptive fields; optic nerve'''
* '''Nov. 18 - Sampling; receptive fields; optic nerve'''
<!--
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides]
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture4.pdf Lecture slides]
** Reading:
** Reading:
*** Rodieck: chapters 12-14
*** Rodieck: chapters 12-14
*** Handout on [http://redwood.berkeley.edu/bruno/VS212B/aliasing.pdf Aliasing]
*** Handout on [http://redwood.berkeley.edu/VS212B/aliasing.pdf Aliasing]
*** Simons et al. paper on  [http://redwood.berkeley.edu/bruno/VS212B/induced-fading-paper.pdf induced visual fading]
*** Simons et al. paper on  [http://redwood.berkeley.edu/VS212B/induced-fading-paper.pdf induced visual fading]
** Demos:   
** Demos:   
*** [http://redwood.berkeley.edu/bruno/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/VS212B/mach.gif Mach bands]
*** [http://redwood.berkeley.edu/bruno/VS212B/gray-vanish.jpg Vanishing gray]
*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray]
*** Induced visual fading [http://redwood.berkeley.edu/bruno/VS212B/induced-fading-movie.mov movie]
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie]
-->
 
* '''Nov. 21 - Redundancy reduction; LGN; visual cortex'''
* '''Nov. 20 - Redundancy reduction; LGN; visual cortex'''
<!--
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides]
** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-lecture5.pdf Lecture slides]
** Reading:
** Reading:
*** [http://redwood.berkeley.edu/bruno/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/VS212B/derrington-etal84.pdf Derrington-Krauskopf-Lennie paper] on color-opponency in LGN
*** [http://redwood.berkeley.edu/bruno/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images
*** [http://redwood.berkeley.edu/bruno/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images
** Demos:
*** [http://www.johnsadowski.com/big_spanish_castle.php Spanish castle color after-effect]


* [http://redwood.berkeley.edu/bruno/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding
* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding
-->


==== Week 4 (Silver) ====
==== Week 4 (Silver) ====
* '''Nov. 26 (4-6PM) - Extrastriate cortex: physiology, anatomy, and neuropsychology'''
* '''Nov. 25 (4 - 6PM) - Extrastriate cortex'''
<!--
** Extrastriate cortex
** [http://redwood.berkeley.edu/bruno/VS212B/nov16_2011_lecture_slides.pdf Lecture slides]
*** [http://redwood.berkeley.edu/VS212B/lecture_1_slides_2013.pdf Lecture slides]
** Supplemental readings (optional):
*** Supplemental readings (optional):
*** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
**** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
*** Fahle and Greenlee, Chapter 7, pp. 210-218
**** Fahle and Greenlee, Chapter 7, pp. 210-218
*** Wolfe et al., Chapter 4, pp. 96-101; Chapter 7, pp. 186-187
**** Kandel et al., Chapter 28, pp. 621-628
*** [http://redwood.berkeley.edu/bruno/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
**** Wolfe et al., Chapter 4, pp. 85-91; Chapter 8, p. 240
*** [http://redwood.berkeley.edu/bruno/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
**** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749]
** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402]
*** [http://redwood.berkeley.edu/bruno/VS212B/anderson_and_winawer_2005.mov Luminance illusion]
*** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/FALLS.MOV Waterfall motion illusion]
**** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion]
*** [http://redwood.berkeley.edu/bruno/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
**** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT]
*** [http://redwood.berkeley.edu/bruno/VS212B/V1MTmovie.mov Locating area MT with fMRI]
**** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI]
*** [http://redwood.berkeley.edu/bruno/VS212B/prosopagnosia.mov Prosopagnosia]
**** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia]
*** [http://redwood.berkeley.edu/bruno/VS212B/misbinding.mov Misbinding of color and motion]
**** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion]
-->
* '''Nov. 28 (4-6PM) - Visual attention'''
<!--
** [http://redwood.berkeley.edu/bruno/VS212B/nov21_2011_lecture_slides.pdf Lecture slides]
** Supplemental readings (optional):
*** Fahle and Greenlee, Chapter 7, pp. 218-236
*** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
*** Wolfe et al., Chapter 8, pp. 189-209
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/Gorilla.mov gorilla change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/quirkology1a.mov The Colour Changing Card Trick]
*** [http://redwood.berkeley.edu/bruno/VS212B/Airplane.mov airplane change blindness demo]
*** [http://redwood.berkeley.edu/bruno/VS212B/Tourists.mov sphinx change blindness demo]
-->


==== Week 5 (Silver) ====
==== Week 5 (Silver) ====
* '''Dec. 3 (4-6PM) - Experimental methods in visual neuroscience'''
* '''Dec. 2 (4 - 6PM) - Visual attention'''
** Visual attention
*** [http://redwood.berkeley.edu/VS212B/lecture_2_slides_2013.pdf Lecture slides]
*** Supplemental readings (optional):
**** Fahle and Greenlee, Chapter 7, pp. 218-236
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
**** Wolfe et al., Chapter 7, pp. 187-218
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick]
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo]
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo]
* '''Dec. 4 (4 - 6PM) - Experimental methods in visual neuroscience'''
** Experimental methods in visual neuroscience
*** [http://redwood.berkeley.edu/VS212B/lecture_3_slides_2013.pdf Lecture slides]
*** Supplemental readings (optional):
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
**** [http://redwood.berkeley.edu/VS212B/lopes_da_silva_2013.pdf Lopes da Silva (2013) "EEG and MEG: Relevance to neuroscience" Neuron 80:1111-1128]
*** Videos from lecture:
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
**** [http://redwood.berkeley.edu/VS212B/SubML_BrainInflation.mp4 cortical inflation and flattening movie]
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]
 
==== Week 6 (Silver) ====
* '''Dec. 11 (4 - 6PM) - Visual cortical development and plasticity'''
<!--
<!--
** [http://redwood.berkeley.edu/bruno/VS212B/nov28_2011_lecture_slides.pdf Lecture slides]
** [http://redwood.berkeley.edu/VS212B/lecture_4_slides_2013.pdf Lecture slides]
** Supplemental readings (optional):
** Supplemental readings (optional):
*** [http://redwood.berkeley.edu/bruno/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
*** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769]
** Videos from lecture:
** Videos from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
*** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging]
*** [http://redwood.berkeley.edu/bruno/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
*** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes]
*** [http://redwood.berkeley.edu/bruno/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
*** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
*** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie]
*** [http://redwood.berkeley.edu/bruno/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
*** [http://redwood.berkeley.edu/VS212B/van_essen_spin.mpg cortical inflation and flattening movie]
*** [http://redwood.berkeley.edu/bruno/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
*** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant]
*** [http://redwood.berkeley.edu/bruno/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
*** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping]
*** [http://redwood.berkeley.edu/bruno/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
*** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping]
*** [http://redwood.berkeley.edu/bruno/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
*** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
*** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex]
*** [http://redwood.berkeley.edu/bruno/VS212B/arash_fazl.gif cortical magnification]
*** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification]
-->
* '''Dec. 5 (4-6PM) - Visual cortical development and plasticity'''
<!--
** [http://redwood.berkeley.edu/bruno/VS212B/nov30_2011_lecture_slides.pdf Lecture slides]
**Supplemental readings (optional):
*** Fahle and Poggio, Introduction, pp. ix-xix
*** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72
*** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1063-1066; Chapter 56, pp. 1115-1127
*** [http://redwood.berkeley.edu/bruno/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
*** [http://redwood.berkeley.edu/bruno/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
** Video from lecture:
*** [http://redwood.berkeley.edu/bruno/VS212B/marla_retinal_waves.MOV Retinal waves]
-->
-->
** [http://redwood.berkeley.edu/VS212B/lecture_4_slides_2013.pdf Lecture slides]
** Visual cortical development and plasticity
*** Supplemental readings (optional):
**** Fahle and Poggio, Introduction, pp. ix-xix
**** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72; Chapter 8, pp. 129-140
**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1218-1221; Chapter 56, pp. 1259-1274
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509]
**** [http://redwood.berkeley.edu/VS212B/kirkby_et_al_2013.pdf Kirkby, Sack, Firl, and Feller (2013) "A role for correlated spontaneous activity in the assembly of neural circuits" Neuron 80:1129-1144]
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884]
*** Video from lecture:
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves]

Latest revision as of 05:44, 10 December 2013

Reading and other resources

  • Rodieck, "First steps in seeing"
  • Wandell, "Foundations of Vision"
  • WEBVISION (online resource)
  • Books on reserve in Optometry library:
    • Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
    • Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
    • Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
    • Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
    • Eric Kandel, et al. (2013, 5th edition) Principles of Neural Science
    • Jeremy Wolfe, et al. (2012, 3rd edition) Sensation and Perception

Syllabus

Week 1 (Olshausen)

  • Nov. 6 - Phototransduction; photoreceptor renewal; dynamic range
    • Lecture slides
    • Reading:
      • Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)

Week 2 (Olshausen)

Week 3 (Olshausen)

  • Lab 2 - natural image statistics and efficient coding

Week 4 (Silver)

Week 5 (Silver)

Week 6 (Silver)

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