VS212B: Difference between revisions
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** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning | ** Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning | ||
** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences | ** Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences | ||
** Eric Kandel, | ** Eric Kandel, et al. (2013, 5th edition) Principles of Neural Science | ||
** Jeremy Wolfe, et al. ( | ** Jeremy Wolfe, et al. (2012, 3rd edition) Sensation and Perception | ||
=== Syllabus === | === Syllabus === | ||
==== Week 1 (Olshausen) ==== | ==== Week 1 (Olshausen) ==== | ||
* '''Nov. | * '''Nov. 4 - The problem of vision; comparative vision; rods and cones.''' | ||
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides] | ** [http://redwood.berkeley.edu/VS212B/olshausen-lecture1.pdf Lecture slides] | ||
** Reading: | ** Reading: | ||
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*** Rodieck: Chapter 3 | *** Rodieck: Chapter 3 | ||
* '''Nov. | * '''Nov. 6 - Phototransduction; photoreceptor renewal; dynamic range''' | ||
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides] | ** [http://redwood.berkeley.edu/VS212B/olshausen-lecture2.pdf Lecture slides] | ||
** Reading: | ** Reading: | ||
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==== Week 2 (Olshausen) ==== | ==== Week 2 (Olshausen) ==== | ||
* '''Nov. | * '''Nov. 11 - (Veteran's Day Holiday)''' | ||
* '''Nov. 13 - Retinal information processing; scale-invariant sampling lattice''' | |||
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides] | ** [http://redwood.berkeley.edu/VS212B/olshausen-lecture3.pdf Lecture slides] | ||
** Reading: | ** Reading: | ||
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==== Week 3 (Olshausen) ==== | ==== Week 3 (Olshausen) ==== | ||
* '''Nov. | * '''Nov. 18 - Sampling; receptive fields; optic nerve''' | ||
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides] | ** [http://redwood.berkeley.edu/VS212B/olshausen-lecture4.pdf Lecture slides] | ||
** Reading: | ** Reading: | ||
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*** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray] | *** [http://redwood.berkeley.edu/VS212B/gray-vanish.jpg Vanishing gray] | ||
*** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie] | *** Induced visual fading [http://redwood.berkeley.edu/VS212B/induced-fading-movie.mov movie] | ||
* '''Nov. | * '''Nov. 20 - Redundancy reduction; LGN; visual cortex''' | ||
** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides] | ** [http://redwood.berkeley.edu/VS212B/olshausen-lecture5.pdf Lecture slides] | ||
** Reading: | ** Reading: | ||
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*** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images | *** [http://redwood.berkeley.edu/VS212B/ruderman-color.pdf Ruderman et al paper] on principal components of color in natural images | ||
*** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images | *** [http://redwood.berkeley.edu/VS212B/olshausen-field96.pdf Olshausen & Field paper] on sparse coding of natural images | ||
* [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding | * [http://redwood.berkeley.edu/VS212B/lab2/lab2.html Lab 2] - natural image statistics and efficient coding | ||
==== Week 4 (Silver) ==== | ==== Week 4 (Silver) ==== | ||
* '''Nov. | * '''Nov. 25 (4 - 6PM) - Extrastriate cortex''' | ||
** Extrastriate cortex | |||
** [http://redwood.berkeley.edu/VS212B/ | *** [http://redwood.berkeley.edu/VS212B/lecture_1_slides_2013.pdf Lecture slides] | ||
** Supplemental readings (optional): | *** Supplemental readings (optional): | ||
*** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562 | **** Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562 | ||
*** Fahle and Greenlee, Chapter 7, pp. 210-218 | **** Fahle and Greenlee, Chapter 7, pp. 210-218 | ||
*** Wolfe et al., Chapter 4, pp. | **** Kandel et al., Chapter 28, pp. 621-628 | ||
*** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749] | **** Wolfe et al., Chapter 4, pp. 85-91; Chapter 8, p. 240 | ||
*** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402] | **** [http://redwood.berkeley.edu/VS212B/livingstone_and_hubel_1988.pdf Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749] | ||
** Videos from lecture: | **** [http://redwood.berkeley.edu/VS212B/merigan_and_maunsell_1993.pdf Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402] | ||
* | *** Videos from lecture: | ||
*** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion] | **** [http://redwood.berkeley.edu/VS212B/FALLS.MOV Waterfall motion illusion] | ||
*** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT] | **** [http://redwood.berkeley.edu/VS212B/MT_direction_selectivity.mov Single unit recording in area MT] | ||
*** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI] | **** [http://redwood.berkeley.edu/VS212B/V1MTmovie.mov Locating area MT with fMRI] | ||
*** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia] | **** [http://redwood.berkeley.edu/VS212B/prosopagnosia.mov Prosopagnosia] | ||
*** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion] | **** [http://redwood.berkeley.edu/VS212B/misbinding.mov Misbinding of color and motion] | ||
==== Week 5 (Silver) ==== | ==== Week 5 (Silver) ==== | ||
* '''Dec. | * '''Dec. 2 (4 - 6PM) - Visual attention''' | ||
** Visual attention | |||
*** [http://redwood.berkeley.edu/VS212B/lecture_2_slides_2013.pdf Lecture slides] | |||
*** Supplemental readings (optional): | |||
**** Fahle and Greenlee, Chapter 7, pp. 218-236 | |||
**** Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288 | |||
**** Wolfe et al., Chapter 7, pp. 187-218 | |||
*** Videos from lecture: | |||
**** [http://redwood.berkeley.edu/VS212B/Gorilla.mov gorilla change blindness demo] | |||
**** [http://redwood.berkeley.edu/VS212B/quirkology1a.mov The Colour Changing Card Trick] | |||
**** [http://redwood.berkeley.edu/VS212B/Airplane.mov airplane change blindness demo] | |||
**** [http://redwood.berkeley.edu/VS212B/Tourists.mov sphinx change blindness demo] | |||
* '''Dec. 4 (4 - 6PM) - Experimental methods in visual neuroscience''' | |||
** Experimental methods in visual neuroscience | |||
*** [http://redwood.berkeley.edu/VS212B/lecture_3_slides_2013.pdf Lecture slides] | |||
*** Supplemental readings (optional): | |||
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769] | |||
**** [http://redwood.berkeley.edu/VS212B/lopes_da_silva_2013.pdf Lopes da Silva (2013) "EEG and MEG: Relevance to neuroscience" Neuron 80:1111-1128] | |||
*** Videos from lecture: | |||
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging] | |||
**** [http://redwood.berkeley.edu/VS212B/tsodyks_et_al.gif evoked versus spontaneous activity with voltage-sensitive dyes] | |||
**** [http://redwood.berkeley.edu/VS212B/spinning_pinwheels.gif orientation pinwheels in visual cortex] | |||
**** [http://redwood.berkeley.edu/VS212B/van_essen_struct_segmented.mpg gray/white matter segmentation movie] | |||
**** [http://redwood.berkeley.edu/VS212B/SubML_BrainInflation.mp4 cortical inflation and flattening movie] | |||
**** [http://redwood.berkeley.edu/VS212B/V1_upper_right_far_peripheral.avi movie of layout of upper right visual field quadrant] | |||
**** [http://redwood.berkeley.edu/VS212B/wedge.mov rotating wedge stimulus used for retinotopic mapping] | |||
**** [http://redwood.berkeley.edu/VS212B/ring.mov expanding ring stimulus used for retinotopic mapping] | |||
**** [http://redwood.berkeley.edu/VS212B/wedge_boynton.mpg angle mapping in visual cortex] | |||
**** [http://redwood.berkeley.edu/VS212B/ring_boynton.mpg eccentricity mapping in visual cortex] | |||
**** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification] | |||
==== Week 6 (Silver) ==== | |||
* '''Dec. 11 (4 - 6PM) - Visual cortical development and plasticity''' | |||
<!-- | <!-- | ||
** [http://redwood.berkeley.edu/VS212B/ | ** [http://redwood.berkeley.edu/VS212B/lecture_4_slides_2013.pdf Lecture slides] | ||
** Supplemental readings (optional): | ** Supplemental readings (optional): | ||
*** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769] | *** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769] | ||
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*** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification] | *** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification] | ||
--> | --> | ||
** [http://redwood.berkeley.edu/VS212B/lecture_4_slides_2013.pdf Lecture slides] | |||
** Visual cortical development and plasticity | |||
** [http://redwood.berkeley.edu/VS212B/ | *** Supplemental readings (optional): | ||
**Supplemental readings (optional): | **** Fahle and Poggio, Introduction, pp. ix-xix | ||
*** Fahle and Poggio, Introduction, pp. ix-xix | **** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72; Chapter 8, pp. 129-140 | ||
*** Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72 | **** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1218-1221; Chapter 56, pp. 1259-1274 | ||
*** Kandel, Schwartz, and Jessell, Chapter 54, pp. | **** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509] | ||
*** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509] | **** [http://redwood.berkeley.edu/VS212B/kirkby_et_al_2013.pdf Kirkby, Sack, Firl, and Feller (2013) "A role for correlated spontaneous activity in the assembly of neural circuits" Neuron 80:1129-1144] | ||
*** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884] | **** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884] | ||
** Video from lecture: | *** Video from lecture: | ||
*** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves] | **** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves] | ||
Latest revision as of 05:44, 10 December 2013
Reading and other resources
- Rodieck, "First steps in seeing"
- Wandell, "Foundations of Vision"
- WEBVISION (online resource)
- Books on reserve in Optometry library:
- Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
- Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
- Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
- Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
- Eric Kandel, et al. (2013, 5th edition) Principles of Neural Science
- Jeremy Wolfe, et al. (2012, 3rd edition) Sensation and Perception
Syllabus
Week 1 (Olshausen)
- Nov. 4 - The problem of vision; comparative vision; rods and cones.
- Lecture slides
- Reading:
- Olshausen, 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.
- Land & Fernald paper on Evolution of Eyes,
- Rodieck: Chapter 3
- Nov. 6 - Phototransduction; photoreceptor renewal; dynamic range
- Lecture slides
- Reading:
- Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)
Week 2 (Olshausen)
- Nov. 11 - (Veteran's Day Holiday)
- Nov. 13 - Retinal information processing; scale-invariant sampling lattice
- Lecture slides
- Reading:
- Rodieck, Chapter3
- Van Essen & Anderson article on Information Processing Strategies and Pathways in the Primate Visual System
- Handout on Degrees, radians, retinal size and sampling
- Useful numbers in vision science
- Lab 1 - simulation of retinal sampling lattice
Week 3 (Olshausen)
- Nov. 18 - Sampling; receptive fields; optic nerve
- Lecture slides
- Reading:
- Rodieck: chapters 12-14
- Handout on Aliasing
- Simons et al. paper on induced visual fading
- Demos:
- Mach bands
- Vanishing gray
- Induced visual fading movie
- Nov. 20 - Redundancy reduction; LGN; visual cortex
- Lecture slides
- Reading:
- Derrington-Krauskopf-Lennie paper on color-opponency in LGN
- Ruderman et al paper on principal components of color in natural images
- Olshausen & Field paper on sparse coding of natural images
- Lab 2 - natural image statistics and efficient coding
Week 4 (Silver)
- Nov. 25 (4 - 6PM) - Extrastriate cortex
- Extrastriate cortex
- Lecture slides
- Supplemental readings (optional):
- Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
- Fahle and Greenlee, Chapter 7, pp. 210-218
- Kandel et al., Chapter 28, pp. 621-628
- Wolfe et al., Chapter 4, pp. 85-91; Chapter 8, p. 240
- Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749
- Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402
- Videos from lecture:
- Extrastriate cortex
Week 5 (Silver)
- Dec. 2 (4 - 6PM) - Visual attention
- Visual attention
- Lecture slides
- Supplemental readings (optional):
- Fahle and Greenlee, Chapter 7, pp. 218-236
- Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
- Wolfe et al., Chapter 7, pp. 187-218
- Videos from lecture:
- Visual attention
- Dec. 4 (4 - 6PM) - Experimental methods in visual neuroscience
- Experimental methods in visual neuroscience
- Lecture slides
- Supplemental readings (optional):
- Videos from lecture:
- single cell calcium imaging
- evoked versus spontaneous activity with voltage-sensitive dyes
- orientation pinwheels in visual cortex
- gray/white matter segmentation movie
- cortical inflation and flattening movie
- movie of layout of upper right visual field quadrant
- rotating wedge stimulus used for retinotopic mapping
- expanding ring stimulus used for retinotopic mapping
- angle mapping in visual cortex
- eccentricity mapping in visual cortex
- cortical magnification
- Experimental methods in visual neuroscience
Week 6 (Silver)
- Dec. 11 (4 - 6PM) - Visual cortical development and plasticity
- Lecture slides
- Visual cortical development and plasticity
- Supplemental readings (optional):
- Fahle and Poggio, Introduction, pp. ix-xix
- Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72; Chapter 8, pp. 129-140
- Kandel, Schwartz, and Jessell, Chapter 54, pp. 1218-1221; Chapter 56, pp. 1259-1274
- Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509
- Kirkby, Sack, Firl, and Feller (2013) "A role for correlated spontaneous activity in the assembly of neural circuits" Neuron 80:1129-1144
- Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884
- Video from lecture:
- Supplemental readings (optional):