VS212B: Difference between revisions
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*** Supplemental readings (optional): | *** Supplemental readings (optional): | ||
**** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769] | **** [http://redwood.berkeley.edu/VS212B/logothetis_and_wandell_2004.pdf Logothetis and Wandell (2004) "Interpreting the BOLD signal" Annual Review of Neuroscience 66:735-769] | ||
**** [http://redwood.berkeley.edu/VS212B/lopes_da_silva_2013.pdf Lopes da Silva (2013) "EEG and MEG: Relevance to neuroscience" Neuron 80:1111-1128] | |||
*** Videos from lecture: | *** Videos from lecture: | ||
**** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging] | **** [http://redwood.berkeley.edu/VS212B/calcium_waves_hippocampus.avi single cell calcium imaging] | ||
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*** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification] | *** [http://redwood.berkeley.edu/VS212B/arash_fazl.gif cortical magnification] | ||
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** [http://redwood.berkeley.edu/VS212B/ | ** [http://redwood.berkeley.edu/VS212B/lecture_4_slides_2013.pdf Lecture slides] | ||
** Visual cortical development and plasticity | ** Visual cortical development and plasticity | ||
*** Supplemental readings (optional): | *** Supplemental readings (optional): | ||
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**** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1218-1221; Chapter 56, pp. 1259-1274 | **** Kandel, Schwartz, and Jessell, Chapter 54, pp. 1218-1221; Chapter 56, pp. 1259-1274 | ||
**** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509] | **** [http://redwood.berkeley.edu/VS212B/huberman_et_al_2008.pdf Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509] | ||
**** [http://redwood.berkeley.edu/VS212B/kirkby_et_al_2013.pdf Kirkby, Sack, Firl, and Feller (2013) "A role for correlated spontaneous activity in the assembly of neural circuits" Neuron 80:1129-1144] | |||
**** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884] | **** [http://redwood.berkeley.edu/VS212B/wandell_and_smirnakis_2009.pdf Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884] | ||
*** Video from lecture: | *** Video from lecture: | ||
**** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves] | **** [http://redwood.berkeley.edu/VS212B/marla_retinal_waves.MOV Retinal waves] | ||
Latest revision as of 05:44, 10 December 2013
Reading and other resources
- Rodieck, "First steps in seeing"
- Wandell, "Foundations of Vision"
- WEBVISION (online resource)
- Books on reserve in Optometry library:
- Leo Chalupa and John Werner (2004) The Visual Neurosciences (two volumes)
- Manfred Fahle and Mark Greenlee (2003) The Neuropsychology of Vision
- Manfred Fahle and Tomaso Poggio (2002) Perceptual Learning
- Michael Gazzaniga (2009, 4th edition) The Cognitive Neurosciences
- Eric Kandel, et al. (2013, 5th edition) Principles of Neural Science
- Jeremy Wolfe, et al. (2012, 3rd edition) Sensation and Perception
Syllabus
Week 1 (Olshausen)
- Nov. 4 - The problem of vision; comparative vision; rods and cones.
- Lecture slides
- Reading:
- Olshausen, 20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked.
- Land & Fernald paper on Evolution of Eyes,
- Rodieck: Chapter 3
- Nov. 6 - Phototransduction; photoreceptor renewal; dynamic range
- Lecture slides
- Reading:
- Rodieck: Chapter 8, plus "Interlude on plotting light intensity" (pp. 151-154)
Week 2 (Olshausen)
- Nov. 11 - (Veteran's Day Holiday)
- Nov. 13 - Retinal information processing; scale-invariant sampling lattice
- Lecture slides
- Reading:
- Rodieck, Chapter3
- Van Essen & Anderson article on Information Processing Strategies and Pathways in the Primate Visual System
- Handout on Degrees, radians, retinal size and sampling
- Useful numbers in vision science
- Lab 1 - simulation of retinal sampling lattice
Week 3 (Olshausen)
- Nov. 18 - Sampling; receptive fields; optic nerve
- Lecture slides
- Reading:
- Rodieck: chapters 12-14
- Handout on Aliasing
- Simons et al. paper on induced visual fading
- Demos:
- Mach bands
- Vanishing gray
- Induced visual fading movie
- Nov. 20 - Redundancy reduction; LGN; visual cortex
- Lecture slides
- Reading:
- Derrington-Krauskopf-Lennie paper on color-opponency in LGN
- Ruderman et al paper on principal components of color in natural images
- Olshausen & Field paper on sparse coding of natural images
- Lab 2 - natural image statistics and efficient coding
Week 4 (Silver)
- Nov. 25 (4 - 6PM) - Extrastriate cortex
- Extrastriate cortex
- Lecture slides
- Supplemental readings (optional):
- Chalupa and Werner, Volume 1, Chapter 34, pp. 541-562
- Fahle and Greenlee, Chapter 7, pp. 210-218
- Kandel et al., Chapter 28, pp. 621-628
- Wolfe et al., Chapter 4, pp. 85-91; Chapter 8, p. 240
- Livingstone and Hubel (1988) "Segregation of form, color, movement, and depth: Anatomy, physiology, and perception" Science 240:740-749
- Merigan and Maunsell (1993) "How parallel are the primate visual pathways?" Annual Review of Neuroscience 16:369-402
- Videos from lecture:
- Extrastriate cortex
Week 5 (Silver)
- Dec. 2 (4 - 6PM) - Visual attention
- Visual attention
- Lecture slides
- Supplemental readings (optional):
- Fahle and Greenlee, Chapter 7, pp. 218-236
- Gazzaniga, Chapter 13, pp. 205-217; Chapter 14, pp. 219-234; Chapter 19, pp. 281-288
- Wolfe et al., Chapter 7, pp. 187-218
- Videos from lecture:
- Visual attention
- Dec. 4 (4 - 6PM) - Experimental methods in visual neuroscience
- Experimental methods in visual neuroscience
- Lecture slides
- Supplemental readings (optional):
- Videos from lecture:
- single cell calcium imaging
- evoked versus spontaneous activity with voltage-sensitive dyes
- orientation pinwheels in visual cortex
- gray/white matter segmentation movie
- cortical inflation and flattening movie
- movie of layout of upper right visual field quadrant
- rotating wedge stimulus used for retinotopic mapping
- expanding ring stimulus used for retinotopic mapping
- angle mapping in visual cortex
- eccentricity mapping in visual cortex
- cortical magnification
- Experimental methods in visual neuroscience
Week 6 (Silver)
- Dec. 11 (4 - 6PM) - Visual cortical development and plasticity
- Lecture slides
- Visual cortical development and plasticity
- Supplemental readings (optional):
- Fahle and Poggio, Introduction, pp. ix-xix
- Gazzaniga, Chapter 1, pp. 7-28; Chapter 4, pp. 67-72; Chapter 8, pp. 129-140
- Kandel, Schwartz, and Jessell, Chapter 54, pp. 1218-1221; Chapter 56, pp. 1259-1274
- Huberman, Feller, and Chapman (2008) "Mechanisms underlying development of visual maps and receptive fields" Annual Review of Neuroscience 31:479-509
- Kirkby, Sack, Firl, and Feller (2013) "A role for correlated spontaneous activity in the assembly of neural circuits" Neuron 80:1129-1144
- Wandell and Smirnakis (2009) "Plasticity and stability of visual field maps in adult primary visual cortex" Nature Reviews Neuroscience 10:873-884
- Video from lecture:
- Supplemental readings (optional):
